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AllenInstitute
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AllenSDK
code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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Error
#2594
zhixinlu
closed
1 year ago
0
Set up auto-linting and run and validate on existing files
#2593
mikejhuang
closed
1 year ago
1
add support for lfp and csd data
#2592
aamster
closed
1 year ago
0
Parse key stimulus & imaging modality features and record them individually
#2591
DowntonCrabby
opened
1 year ago
16
Fixup stimulus table unittests
#2590
morriscb
closed
1 year ago
1
ticket-2578: Add function to fixup omitted stimulus end_frame values.
#2589
morriscb
closed
1 year ago
1
Ticket-2581: Modify session name to be consistent with already released VBN data.
#2588
morriscb
closed
1 year ago
1
Csd re-referencing
#2587
corbennett
closed
1 year ago
1
Add "active" column to stimulus presentations table
#2586
aamster
opened
1 year ago
0
Split core modules into new repository with minimal dependencies
#2585
tmchartrand
opened
1 year ago
2
Ticket-2524: corrected_fluorescence_traces to represent neuropil_corrected_trace instead of demixed_trace
#2584
mikejhuang
closed
1 year ago
5
Output clean channels
#2583
aamster
closed
1 year ago
0
return tuple, not list to index array
#2582
aamster
closed
1 year ago
0
VBN ephys and behavior-only stim tables handle stimulus_name column inconsistently
#2581
corbennett
closed
1 year ago
2
Fixes dataframe indices
#2580
aamster
closed
1 year ago
2
Ticket-2574: Add flashes_since_change to VBN stim table.
#2579
morriscb
closed
1 year ago
4
Inconsistent handling of omitted stimuli in VBN ecephys and behavior-only sessions
#2578
corbennett
closed
1 year ago
3
spurious omitted stimuli at beginning of VBN sessions
#2577
corbennett
opened
1 year ago
2
identify discrepancies between VBO and VBN tables
#2576
DowntonCrabby
opened
1 year ago
1
ticket-2558:
#2575
morriscb
closed
1 year ago
0
Add columns to BehaviorSession stimulus table for VBN.
#2574
morriscb
closed
1 year ago
0
'probe_channel_number' should replace 'local_index' in ecephys_session, line 1244 (_build_mean_waveforms)
#2573
ryan-gorzek
closed
1 year ago
3
ticket-2563: Linking the VBN stim and trials tables
#2572
morriscb
closed
1 year ago
3
Investigate and create neuropil mask code
#2571
morriscb
opened
1 year ago
1
Add behavior performance information to the `behavior_session_table` cache/manifest summary table
#2570
DowntonCrabby
closed
1 year ago
3
`stimulus_presentations` table currently lists the stimulus file name as `image_set`
#2569
DowntonCrabby
closed
1 year ago
4
Fix BehaviorSessionId type in single process LIMS cache api
#2568
morriscb
closed
1 year ago
1
Ticket-2566
#2567
morriscb
closed
1 year ago
0
Remove raise exception in eye tracking processing behavior only sessions
#2566
morriscb
closed
1 year ago
2
SDK to return neuropil corrected traces, masks, and associated metrics
#2565
matchings
closed
1 year ago
7
Modify StimulusFile to accept inhomogenious formating from VBO
#2564
morriscb
closed
1 year ago
4
Linking the VBN stim and trials tables
#2563
corbennett
closed
1 year ago
5
ticket-2543
#2562
morriscb
closed
1 year ago
5
Create final VBN 2.0 release data/metadata
#2561
danielsf
opened
1 year ago
2
Verify that VBN BehaviorSession API works
#2560
danielsf
closed
1 year ago
2
Generate VBN behavior-only NWB files
#2559
danielsf
closed
1 year ago
0
Create module to generate input JSONs for VBN behavior only sessions
#2558
danielsf
closed
1 year ago
7
Build cloud API for downloading LFP NWB files
#2557
danielsf
closed
1 year ago
0
Determine if LFP data requires to metadata
#2556
danielsf
closed
1 year ago
1
Generate LFP NWB files for release
#2555
danielsf
closed
1 year ago
2
Write python module to create input JSON for LFP NWB generation
#2554
danielsf
closed
1 year ago
2
Release VBO fall 2022 data
#2553
danielsf
opened
1 year ago
0
Iterate with science team to update VBO documentation
#2552
danielsf
opened
1 year ago
0
Update VBO tutorial notebooks
#2551
danielsf
opened
1 year ago
3
Pika validation of VBO data release
#2550
danielsf
opened
1 year ago
0
Generate VBO fall 2022 NWB files
#2549
danielsf
opened
1 year ago
0
VBN 2.0
#2548
danielsf
opened
1 year ago
0
VBO fall 2022
#2547
danielsf
opened
1 year ago
0
eye tracking data should be associated with behavior_session object
#2546
DowntonCrabby
closed
1 year ago
2
update 'imaging_depth' definition & calculation for all ophys_experiment objects & cache/summary tables
#2545
DowntonCrabby
closed
1 year ago
4
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