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AllenInstitute
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AllenSDK
code for reading and processing Allen Institute for Brain Science data
https://allensdk.readthedocs.io/en/latest/
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Ophys cells table now supports passed_only filter
#2497
aamster
closed
2 years ago
1
AWS jupyter notebook
#2496
bainro
closed
2 years ago
2
Adds support for VBN trials table having different name for 'change_time'
#2495
aamster
closed
2 years ago
0
fix test
#2494
aamster
closed
2 years ago
0
after pynwb update from 2.01 to 2.1.0, the defaults on the electrode …
#2493
aamster
closed
2 years ago
0
Redeploy the VBN metadata tables into S3.
#2492
morriscb
closed
1 year ago
0
How to access the actual image data or directly mean image from allensdk.core.brain_observatory_nwb_data_set
#2491
NiRuff
closed
2 years ago
1
'change_time_no_display_delay' key in trial table breaks session.get_rolling_performance_df() method
#2490
egmcbride
closed
1 year ago
5
adds left_right_ccf_coordinate to project level units table
#2489
aamster
closed
2 years ago
0
reads session type from pkl file instead of from mtrain
#2488
aamster
closed
2 years ago
1
Run learning-mFish data through the full LIMS queues.
#2487
morriscb
closed
1 year ago
1
VBN units table missing left-right ccf coord
#2486
corbennett
closed
1 year ago
0
Regarding reading of NWB files with PyNWB and Python-Neo
#2485
appukuttan-shailesh
opened
2 years ago
0
Identify all dependencies on mtrain
#2484
aamster
closed
2 years ago
1
BehaviorSession.from_lims now supports checking if eye tracking metad…
#2483
aamster
closed
2 years ago
1
Docstring/type hint improvements to VisualBehaviorNeuropixelsProjectCache
#2482
aamster
closed
2 years ago
0
increase lower bound on jinja2
#2481
aamster
closed
2 years ago
0
Improve documentation on VisualBehaviorNeuropixelsProjectCache
#2480
aamster
closed
2 years ago
1
ticket-2464: Modify loading projection image to get correct data from lims.
#2479
morriscb
closed
2 years ago
1
VBN rc/2.13.5 branch - ImportError: cannot import name 'soft_unicode' from 'markupsafe'
#2478
olsenshawn
closed
2 years ago
2
cannot retrieve any data from LIMS db mouse_id = 624942
#2477
mattjdavis
closed
2 years ago
1
Vbn/access
#2476
danielsf
closed
2 years ago
0
no longer increment epoch_start/end in stimulus_presentations/trials …
#2475
danielsf
closed
2 years ago
0
Ticket/2371/vbo/access
#2474
danielsf
closed
2 years ago
0
eye tracking does not load on rc/2.13.5
#2473
mattjdavis
closed
2 years ago
3
MVR experiment metadata fix + truncate
#2472
mattjdavis
closed
2 years ago
2
Ticket/2470/vbn/documentation
#2471
danielsf
closed
2 years ago
1
Write/connect VBN documentation notebooks
#2470
danielsf
closed
1 year ago
4
Ticket/2467/trials/times
#2469
danielsf
closed
2 years ago
0
tolist() can be expensive; use list comprehension instead which is fas…
#2468
aamster
closed
2 years ago
0
VBN trials change time disagrees with stim table change time
#2467
corbennett
closed
2 years ago
6
update min hdmf version in order to support newer h5py versions
#2466
aamster
closed
2 years ago
0
Memory leak
#2465
aamster
closed
2 years ago
0
Address issues with mFish, suite2p segmented data in the SDK
#2464
morriscb
closed
2 years ago
4
Incompatible with tensorflow 2.6.0
#2463
bjmiao
closed
2 years ago
8
Ticket/2454/rename/vbn/fields
#2462
danielsf
closed
2 years ago
0
Meet with Marina about memory issue
#2461
danielsf
closed
2 years ago
1
Investigate manual garbage collection of DataObjects
#2460
danielsf
closed
2 years ago
1
Importing ecephys_project_cache is slow
#2459
ahwillia
closed
2 years ago
4
Collect requirements for unblocking learning-mFISH
#2458
danielsf
closed
2 years ago
1
Unblock learning-mFISH pipeline
#2457
danielsf
opened
2 years ago
1
Ticket/2454/rename/vbn/fields
#2456
danielsf
closed
2 years ago
0
Ticket/2453/bad/mouse
#2455
danielsf
closed
2 years ago
1
Rename fields in VBN data/metadata
#2454
danielsf
closed
2 years ago
1
missing VBN behavior sessions for mouse 506940
#2453
corbennett
closed
2 years ago
3
VBN sessions table 'session number' column doesn't reflect failed sessions
#2452
corbennett
closed
2 years ago
3
Ticket/2450/supplemental/columns
#2451
danielsf
closed
2 years ago
0
Add columns to VBN metadata tables
#2450
danielsf
closed
2 years ago
1
Ticket/2443/missing/sessions
#2449
danielsf
closed
2 years ago
0
Define scope of behavior tracking fields for Ecephys NWB files
#2448
danielsf
opened
2 years ago
0
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