BIMSBbioinfo janggu issues

BIMSBbioinfo / janggu

Deep learning infrastructure for genomics

GNU General Public License v3.0

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issues

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Installation error with pysam

#34 davidecarnevali opened 5 months ago
0
Compatibility with Biopython

#33 anikapatel999 opened 9 months ago
0
GenomicIndexer Functionality

#32 tfabiha closed 2 years ago
2
Conflict between Numpy 1.19 and Keras

#31 theheking opened 2 years ago
0
removed ReduceDim

#30 starboyvarun closed 3 years ago
1
AxisError: axis 2 is out of bounds for array of dimension 2

#29 starboyvarun closed 3 years ago
3
Index Error: tuple index out of range

#28 starboyvarun closed 3 years ago
4
NotImplementedError: "intersectBed" does not appear to be installed or on the path, so this method is disabled. Please install a more recent version of BEDTools and re-import to use this method.

#27 starboyvarun closed 3 years ago
3
Type Error: __init__() got an unexpected keyword argument 'epochs'

#26 starboyvarun closed 3 years ago
1
"intersectBed" does not appear to be installed or on the path.

#25 starboyvarun closed 3 years ago
3
NotImplementedError: "intersectBed" does not appear to be installed

#24 starboyvarun closed 3 years ago
2
NameError :

#23 starboyvarun closed 3 years ago
2
syntax Error:

#22 starboyvarun closed 3 years ago
2
NotFoundError : _ZN10tensorflow8OpKernel11TraceStringB5cxx11EPNS_15OpKernelContextEb

#21 starboyvarun closed 3 years ago
3
keras.engine.topology

#20 starboyvarun closed 3 years ago
19
UnboundLocalError: local variable 'process_chrom' referenced before assignment

#19 theheking closed 3 years ago
2
String decoding error when running the CAGE prediction example

#18 cahn20 closed 3 years ago
3
BEDTools Installation

#17 Liquidten closed 3 years ago
7
Add python 3.8 compatibility

#16 bruceoutdoors closed 3 years ago
6
Classify_nucleotide_sequences

#15 eallen4040 closed 4 years ago
1
Weird one-hot encode from sequences stored as biopython SeqRecord

#14 PedroBarbosa closed 4 years ago
2
input_attribution from a Bioseq object

#13 PedroBarbosa closed 4 years ago
4
VariantStreamer fails if ROI is supplied when loading the reference genome

#12 PedroBarbosa closed 4 years ago
2
Invalid interval bounds when creating from bigwig

#11 PedroBarbosa closed 4 years ago
3
Compatibility with keras >=2.30 and tensorflow 2

#10 PedroBarbosa closed 4 years ago
2
Problem with plotGenomeTrack

#9 martynakgajos closed 5 years ago
2
flank-option close to chromosome boundaries leads to invalid genomic intervals, which can't be parsed correctly by utils._str_to_iv

#8 remomomo closed 5 years ago
1
README

#7 remomomo closed 5 years ago
2
Develop

#6 Annalaura94 closed 5 years ago
0
[Model comparison] Add filtering options

#5 wkopp closed 6 years ago
0
Share datasets via browser cache in the Dash app

#4 wkopp closed 5 years ago
1
BAM support for single-cell data

#3 wkopp closed 5 years ago
1
BAM readout for paired-end datasets

#2 wkopp closed 6 years ago
0
Support for sparse datasets

#1 wkopp closed 6 years ago
1