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BaderLab
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EnrichmentMapApp
The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
http://apps.cytoscape.org/apps/enrichmentmap
GNU Lesser General Public License v2.1
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Heat Map Export as TXT: truncated description column after export
#398
veroniquevoisin
closed
4 years ago
0
when a geneset is empty an edge is created from it to all genesets
#397
risserlin
closed
4 years ago
3
Filter heat map based on data set of selected edge.
#396
risserlin
closed
4 years ago
0
Empty chart on PA nodes.
#395
mikekucera
closed
4 years ago
3
Selecting "compress: none" in heatmap has no effect.
#394
mikekucera
closed
4 years ago
1
Add support for enrichr
#393
mikekucera
closed
4 years ago
0
EMap 3.1.0 - Fill colour customization gets overwritten
#392
shraddhapai
closed
1 year ago
1
differences in # leading edge genes returned: EM vs GSEA. Due to filtering of the GMT file (?)
#391
guidohooiveld
closed
2 years ago
2
HeatMap data sets are in the wrong order
#390
mikekucera
closed
4 years ago
0
gmt upload failed at create Enrichment map validation step
#389
cagenet
closed
4 years ago
5
Generic/gprofiler demanding a GMT file and crashing if one is provided
#388
ghost
closed
4 years ago
5
Add links to readthedocs
#387
mikekucera
closed
4 years ago
0
Bump apache-karaf from 4.2.1 to 4.2.3 in /EnrichmentMapIntegrationTest
#386
dependabot[bot]
closed
2 years ago
1
create EM through cyrest without files
#385
risserlin
closed
3 years ago
8
How can I tell which column in the "Dataset_Chart" in the node table refers to which dataset?
#384
risserlin
closed
4 years ago
3
Multiple points error message
#383
marcomontagner
closed
4 years ago
5
Bump jackson-databind from 2.2.2 to 2.9.10.1 in /EnrichmentMapPlugin
#382
dependabot[bot]
closed
4 years ago
1
Unable to create Enrichment Map: Internal Server Error - Failed: empty String
#381
mjrich79
closed
4 years ago
2
Nodes from DAVID Chart appear as Category
#380
gaelanm
closed
4 years ago
4
EM3.2.1: post analysis (signature gene set) node and edges are empty
#379
veroniquevoisin
closed
4 years ago
0
Fix Panel Icon for 3.8
#378
mikekucera
closed
4 years ago
0
take enrichment results from genemania or string and create EM results
#377
risserlin
closed
4 years ago
6
EM 3.2.1-RC1 when changing between different Maps style doesn't refresh
#376
risserlin
closed
5 years ago
1
Providing information about the license EnrichmentMapApp is under
#375
Alex-Temny
closed
1 year ago
1
Add regular expression parameter to mastermap command
#374
risserlin
closed
5 years ago
1
Add documentation on mastermap (and missing automation commands) to readthedocs
#373
risserlin
closed
5 years ago
4
Unable to create Enrichment Map:Internal Server ErrorResponseEntityProxy{[Content-Type: text/plain,Content-Length: 165,Chunked: false]}
#372
faizkhan1
closed
4 years ago
2
Sliders on EnrichmentMap make network disappear
#371
mikekucera
closed
4 years ago
1
Add important info to DAVID file type in documentation
#370
risserlin
closed
5 years ago
1
geneset not found in gmt file
#369
whitleyo
closed
5 years ago
1
EM3.2: GSEA fields do not populate automatically using "regular" GSEA output folder
#368
veroniquevoisin
closed
2 years ago
10
Black boxes surrounding EM nodes in Inkscape
#367
rosscm
closed
5 years ago
5
EM3.2 Table panel : ranking issue
#366
veroniquevoisin
closed
5 years ago
1
No EM integration with GeneMANIA, Pathway common etc.
#365
Alteroldis
closed
5 years ago
2
Unable to create multiple map in latest cytoscape
#364
risserlin
closed
5 years ago
1
Better ways to select genes to open in GeneMANIA/STRING
#363
mikekucera
closed
5 years ago
0
HeatMap: sort ranks automatically depending on if its a red node or blue node
#362
mikekucera
closed
4 years ago
3
Enrichment Map GMT error
#361
pankajdwid
closed
5 years ago
15
Sometimes the Heat Map does not initialize correctly
#360
mikekucera
closed
5 years ago
0
EM using Baderlab genesets - parse name
#359
risserlin
closed
4 years ago
2
Enrichment map error: "Failed: None of the gene sets have passed the filter"
#358
giuseppedelnapalle
closed
5 years ago
5
Cannot directly load files from GSEA
#357
mikekucera
closed
5 years ago
13
"Color by expression data" chart doesn't work if expression data missing
#356
mikekucera
closed
5 years ago
0
Ranks are not showing up in the heatmap
#355
mikekucera
closed
5 years ago
0
ColorByDataset - allow user to choose colors
#354
shraddhapai
closed
4 years ago
2
Mastermap command does not return network suid
#353
risserlin
closed
5 years ago
0
mastermap and build command don't match up with regards to similarityMetric parameter
#352
risserlin
closed
5 years ago
1
Add button or way from the EM input panel to get the associated command
#351
risserlin
closed
4 years ago
0
issues with associated networks
#350
mikekucera
closed
5 years ago
2
EM control panel is too wide
#349
mikekucera
closed
5 years ago
0
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