BaderLab EnrichmentMapApp issues

BaderLab / EnrichmentMapApp

The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.

http://apps.cytoscape.org/apps/enrichmentmap

GNU Lesser General Public License v2.1

32 stars 12 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Add button or way from the EM input panel to get the associated command

#351 risserlin closed 4 years ago
0
issues with associated networks

#350 mikekucera closed 5 years ago
2
EM control panel is too wide

#349 mikekucera closed 6 years ago
0
Expand EM command options

#348 risserlin closed 5 years ago
1
Allow custom colouring for Radial Heat Map Image Chart

#347 s2hui closed 5 years ago
2
Memory leak in HeatMap

#346 mikekucera closed 6 years ago
0
Move pathway commons action to heat map

#345 mikekucera closed 6 years ago
0
Change node border color/width in the default one dataset analysis

#344 risserlin opened 6 years ago
0
"pathway.commons.url" linkout URL points to localhost rather than PC Painter

#343 jvwong closed 6 years ago
2
Check for class and expression file before launching Painter app

#342 risserlin closed 6 years ago
0
once EM throughs an exception Build button is grayed out

#341 risserlin closed 5 years ago
0
unable to generate enrichmentmap. no edges and nodes are shown as NA or html links

#340 kr25 closed 6 years ago
4
building a new enrichment map on a new/fresh session on the same session

#339 veroniquevoisin closed 6 years ago
2
no EnrichmentMap tab opened in Control Panel

#338 veroniquevoisin closed 6 years ago
0
Heat map table header can be too small

#337 mikekucera closed 6 years ago
0
incompatibility of node and edge colours

#336 risserlin closed 6 years ago
1
issue with generic gene comma delimiter

#335 risserlin closed 5 years ago
1
building the exact same network from commands or from the interface generates two different networks

#334 risserlin closed 6 years ago
2
Add Column Namespaces

#333 mikekucera closed 5 years ago
2
importing attribute table: attributes are only visible for last EM network

#332 veroniquevoisin closed 6 years ago
1
Publication-Ready should only remove gene-set labels but not revert manually defined style

#331 veroniquevoisin closed 1 year ago
3
eliminate the redundancy of gene set name in EM

#330 risserlin closed 3 years ago
2
legend: one part of the EM legend was hidden until I unselect and reselect the Data Set

#329 veroniquevoisin closed 6 years ago
1
3.1 on Cytoscape 3.6: Node Layout Tools is hiding "Publication ready" and "Set Signature Edge with

#328 veroniquevoisin closed 6 years ago
1
Allow "scan" button to select a list of files

#327 mikekucera closed 6 years ago
2
reloading GSEA session p-value/q-value slider only showing up as p-value slider

#326 risserlin closed 5 years ago
3
GMT file from baderlab website not loading

#325 mikekucera closed 6 years ago
0
NullPointer when saving second session with EnrichmentMap

#324 krassowski closed 6 years ago
4
Legend edge color list does not match the network

#323 mikekucera closed 5 years ago
0
"Color by dataset" pie segments are in the wrong order

#322 mikekucera closed 6 years ago
0
Legend does not work for "Color by dataset"

#321 mikekucera closed 6 years ago
0
Legend for radial heat map is in the wrong order.

#320 mikekucera closed 6 years ago
1
RC3 EnrichmentMap Creation Parameters

#319 veroniquevoisin closed 6 years ago
2
map with multiple datasets: node pie chart , is it possible to place the legend on the EM control panel?

#318 veroniquevoisin closed 4 years ago
4
Hypergeometric 'n' parameter inconsistent with 3.0

#317 mikekucera closed 6 years ago
0
EM 3.1 RC2: node color when map is created with 4 GSEA datasets?

#316 veroniquevoisin closed 6 years ago
1
RC2 3.1 EM with 4 GSEA datasets --> Cytoscape is frozen

#315 veroniquevoisin closed 5 years ago
2
3.1 RC2: playing with q-value slide bar --> cytoscape is frozen

#314 veroniquevoisin closed 6 years ago
0
3.1.0-RC2 EM with gProfiler 3 datasets. want to see only genes in dataset3

#313 veroniquevoisin closed 5 years ago
0
EM panel does not scroll

#312 mikekucera closed 6 years ago
0
Node Size, gProfiler EM: EM1_gs_size min set to 10 but I have node with size < 2

#311 veroniquevoisin closed 5 years ago
0
RC3.1 heatmap selecting Genes: issue when changing from Common to All if Common if first selected

#310 veroniquevoisin closed 6 years ago
8
RC3.1 not able to upload a GSEA folder into EM but can upload the files manually

#309 veroniquevoisin closed 6 years ago
1
Add signature data sets to creation parameters dialog

#308 mikekucera closed 6 years ago
0
RC3.1 coloring nodes using attributes imported as a table

#307 veroniquevoisin closed 5 years ago
3
Tree view for post analysis web load

#306 mikekucera closed 6 years ago
0
RC3.1 purpose of the dataset box in input window?

#305 veroniquevoisin closed 6 years ago
3
3.1 RC trying to load in my own post analysis gmt fails

#304 risserlin closed 6 years ago
0
3.1 RC - when I bypass the style on some EM nodes the style is blocked by the chart

#303 risserlin closed 3 years ago
1
RC 3.1.0 stored session and q and p value slide bar: it changes the layout

#302 veroniquevoisin closed 6 years ago
2

Previous Next