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BauerLab
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ngsane
Analysis Framework for Biological Data from High Throughput Experiments
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Update to GATK 3.6
#52
BauerLab
opened
8 years ago
0
Unable to export EC2 image
#51
geopcgeo
opened
8 years ago
2
evolution of the fithic workflow
#50
Gurado
closed
9 years ago
0
How to deal with Hi-C-seq datasets with three replicates?
#49
xflicsu
closed
9 years ago
3
bug in hicupCountInteractions.py
#48
xflicsu
closed
9 years ago
2
SamVar
#47
BauerLab
opened
10 years ago
1
QC.sh extend tail length for FINISH tag detection
#46
BauerLab
closed
10 years ago
0
trimmomatic javaparameter
#45
BauerLab
closed
10 years ago
0
BWA index make parameter variable
#44
BauerLab
closed
10 years ago
2
Support SLURM submission system
#43
BauerLab
closed
10 years ago
1
non-standard characters in input files/folders
#42
noncodo
opened
10 years ago
0
Check if modules.sh is installed
#41
Gurado
closed
10 years ago
1
Add bzip2 support for fastq files
#40
Gurado
closed
10 years ago
1
Brush up Annovar annotation for SNPs
#39
BauerLab
opened
10 years ago
0
Add module for SRA to fastq conversion
#38
BauerLab
closed
10 years ago
1
FastQC output processing
#37
noncodo
closed
10 years ago
1
HTSeq with ERCC GTF creates error.
#36
gboris
closed
10 years ago
2
masked file generation in HTSeq count
#35
gboris
closed
10 years ago
1
Generate "coverage at genomic features" plot
#34
BauerLab
closed
10 years ago
1
Generate trackhubs
#33
Gurado
closed
10 years ago
3
Pipes create additional processes
#32
BauerLab
closed
10 years ago
1
Cufflinks mod core dump's with multi-read & frag-bias correction
#31
gboris
closed
10 years ago
5
Summary html creates error if to many samples are submitted
#30
gboris
closed
10 years ago
1
Consider using Cram or Bam adjustments to cut down on filesize
#29
Gurado
opened
10 years ago
0
bowtie2.sh library tags
#28
noncodo
closed
10 years ago
1
Better output for Smokebox differenceparser
#27
BauerLab
closed
10 years ago
0
Generation of summary tarballs
#26
Gurado
closed
10 years ago
1
Refactor mods to take maximal use of temp folder
#25
Gurado
closed
10 years ago
1
Merge iterative bam files from hiclib
#24
Gurado
closed
10 years ago
1
Maximise compression of bam files
#23
Gurado
closed
10 years ago
1
Implement fit-hi-c module
#22
Gurado
closed
10 years ago
1
Refactor genome digestion to run once
#21
Gurado
closed
10 years ago
1
Update hicup to v0.4.2
#20
Gurado
closed
10 years ago
1
HIC smoketest
#19
Gurado
closed
10 years ago
1
Breakdancer
#18
BauerLab
opened
10 years ago
0
Add option to split GATK-variant calling by chromosome
#17
BauerLab
closed
10 years ago
1
Export project card html
#16
noncodo
closed
10 years ago
1
Recal needs .dict check
#15
BauerLab
opened
11 years ago
0
Create bam2fastq module
#14
BauerLab
opened
11 years ago
1
Pindel
#13
BauerLab
closed
10 years ago
1
checkpoint enhancement
#12
noncodo
opened
11 years ago
0
Pipelines with keep
#11
allPowerde
opened
11 years ago
1
new module: blue
#10
allPowerde
closed
11 years ago
1
Smokebox
#9
allPowerde
closed
11 years ago
1
Smokebox
#8
allPowerde
closed
11 years ago
0
Task chaining
#7
allPowerde
closed
11 years ago
1
bigWig
#6
allPowerde
closed
11 years ago
1
Capture resrouce consumption on html Summary
#5
allPowerde
opened
11 years ago
0
name of HTML file needs to be a variable
#4
allPowerde
closed
11 years ago
1
Java memory consumtion
#3
allPowerde
closed
11 years ago
1
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