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BiaPyX
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BiaPy
Open source Python library for building bioimage analysis pipelines
https://BiaPyX.github.io
MIT License
114
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28
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Include new model U-NeXt.
#89
anepaniagua
closed
10 hours ago
0
Add indentation where needed in process sample by chunks
#88
ClementCaporal
closed
10 hours ago
0
Include new model U-NeXt.
#87
anepaniagua
closed
13 hours ago
0
Add option to choose metrics and repare some of the losses
#86
danifranco
opened
1 day ago
0
Update notebooks with visualization and inference cells.
#85
anepaniagua
closed
6 days ago
0
CLI installation of Biapy (torch) for MacOS: Docs update
#84
Mohinta2892
closed
1 week ago
5
Fix outdata_shape when C is not last dimension
#83
ClementCaporal
closed
1 month ago
0
Support for patching over multiple datasets in Zarrs
#82
Mohinta2892
closed
1 week ago
2
Memory error in UNET prediction with patches
#81
mcblache
closed
1 month ago
7
error during TEST/INFERENCE using percentile normalization in detection workflow [bug]
#79
pr4deepr
closed
1 month ago
9
documentation suggestion
#78
pr4deepr
closed
2 months ago
1
bug: import error: pytorch_msssim
#77
pr4deepr
closed
2 months ago
1
I2i development
#76
danifranco
closed
2 months ago
0
Add more options to select patches for training
#75
danifranco
opened
2 months ago
1
bug: Biapy crashes with detection workflow on latest branch
#74
pr4deepr
closed
3 months ago
1
running biapy after pip install
#73
pr4deepr
closed
1 month ago
6
Incorrect number of epochs on metric plot
#72
iarganda
closed
2 months ago
1
C-channel-only instance segmentation
#71
iarganda
closed
3 months ago
0
Notebooks update
#70
lenkaback
closed
3 months ago
0
Link to templates from Docs broken for Super-resolution
#69
Mohinta2892
closed
3 months ago
1
Multi thread detection
#68
ClementCaporal
closed
4 months ago
1
Detection could be multi threaded
#67
ClementCaporal
closed
4 months ago
0
Merge super resolution branch
#66
danifranco
closed
4 months ago
0
Fix bug in base_workflow.py
#64
gnodar01
closed
4 months ago
2
Rotation 90
#63
danifranco
closed
4 months ago
0
Allow classes into instance segmentation workflow
#62
danifranco
closed
4 months ago
1
Remove imgaug dependency
#61
danifranco
opened
4 months ago
3
Wrong net architecture in 3D Classification notebook
#59
iarganda
closed
5 months ago
2
Error in 3D classification notebook
#58
iarganda
closed
5 months ago
1
check in advance if df_patch is none
#57
ClementCaporal
closed
5 months ago
0
check if detection is not null when creating dataframe.
#56
ClementCaporal
closed
5 months ago
0
Error when first detection df_patch is null
#55
ClementCaporal
closed
5 months ago
0
add overlap when splitting z dimension
#54
ClementCaporal
closed
5 months ago
0
Fix patch position and overlap
#53
ClementCaporal
closed
5 months ago
0
Merging Aitor changes (preprocessing)
#52
danifranco
closed
5 months ago
0
New data preprocessing
#51
AAitorG
closed
5 months ago
0
Possible Patch related errors for detection
#50
ClementCaporal
closed
5 months ago
12
add use case of zarr with groups
#49
ClementCaporal
closed
5 months ago
0
Versatile zarr loading
#48
ClementCaporal
closed
5 months ago
1
Zarr loading breaks when the zarr has group before arrays
#47
ClementCaporal
closed
5 months ago
0
Add more image quality metrics
#46
iarganda
opened
5 months ago
0
Versatile input img axes order
#45
ClementCaporal
closed
5 months ago
1
Correct folder structure, import modules and main function definition
#44
lenkaback
closed
6 months ago
0
Input zarr axes order in config file while loading Zarr/H5
#43
ClementCaporal
closed
5 months ago
3
Error handling TIFFs created in MIB
#42
sgtsmg90
closed
6 months ago
1
Zarr/H5 post-processing for instance segmentation
#41
danifranco
opened
7 months ago
0
Add more data pre-processing
#40
AAitorG
closed
5 months ago
0
Add support for .nii.gz extension
#39
danifranco
opened
7 months ago
0
Support Torchvision models
#38
danifranco
closed
6 months ago
1
Enable Bioimage Model Zoo pretrained models for training
#37
danifranco
closed
1 week ago
1
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