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BioJulia
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FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
https://biojulia.dev
MIT License
61
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20
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Delete workaround for compat with extensions
#127
jakobnissen
closed
1 day ago
1
Mark const fields as const
#126
jakobnissen
closed
1 day ago
1
Drop support for Julia <1.10
#125
jakobnissen
closed
1 day ago
1
Update TranscodingStreams compat to 0.11
#124
jakobnissen
closed
3 months ago
1
Upgrade CI
#123
jakobnissen
closed
3 months ago
1
Disable CI for x86 macOS-latest
#122
jakobnissen
closed
3 months ago
0
Import missing symbol in FASTQ
#121
jakobnissen
closed
3 months ago
0
Flip sticker
#120
jakobnissen
closed
3 months ago
1
Do not reach into TranscodingSteams internals
#119
jakobnissen
closed
6 months ago
1
Next release of TranscodingStreams will likely break this package
#118
nhz2
closed
6 months ago
1
Update issue and PR template to match BioJulia guidelines
#117
jakobnissen
closed
12 months ago
1
Bump TranscodingStreams to 0.10
#116
jakobnissen
closed
1 year ago
1
CompatHelper: bump compat for "TranscodingStreams" to "0.10"
#115
github-actions[bot]
closed
6 months ago
0
Add Base.print(::IO, ::Index)
#114
jakobnissen
closed
1 year ago
1
Make documentation more approachable
#113
jakobnissen
closed
1 year ago
1
Drop ReTest test dep
#112
jakobnissen
closed
1 year ago
1
Use new BioGenerics macros
#111
jakobnissen
opened
1 year ago
1
Non-indexed FASTA: access sequence by genomic region
#110
apraga
closed
1 year ago
1
CompatHelper: bump compat for "Automa" to "1.0"
#109
github-actions[bot]
closed
1 year ago
0
Migrate to Automa v1
#108
jakobnissen
closed
1 year ago
0
ERROR: Error when parsing FASTX file. Saw unexpected byte 'C' on line 1
#107
ljournot
closed
1 year ago
3
Add short-form show for records
#106
jakobnissen
closed
1 year ago
1
Fix: Allow non-PHRED quality scores e.g. Solexa
#105
jakobnissen
closed
1 year ago
1
Issue with QualityEncoding for the Solexa format
#104
AntonOresten
closed
1 year ago
2
CompatHelper: bump compat for "ScanByte" to "0.4"
#103
github-actions[bot]
closed
1 year ago
0
Bump ScanByte
#102
jakobnissen
closed
1 year ago
1
package does not precompile
#101
pfarndt
closed
1 year ago
17
Fix doc examples for writer with do-syntax
#100
jakobnissen
closed
1 year ago
1
Implement copy! for records
#99
jakobnissen
closed
1 year ago
1
Migrate from SnoopPrecompile to PrecompileTools
#98
timholy
closed
1 year ago
1
Fix Base.read!(::Reader, ::Record) and add tests
#96
jakobnissen
closed
1 year ago
0
read! doesn't work in v2.0.0?
#95
banhbio
closed
1 year ago
3
Document `read!(::Reader, ::Record)`
#94
jonathanBieler
opened
1 year ago
4
Make BioSequences a weak dependency
#93
jakobnissen
closed
1 year ago
2
Improve precompilation
#92
jakobnissen
closed
1 year ago
1
Consider despecializing AbstractFormattedIOs
#91
jakobnissen
opened
1 year ago
3
Make BioSequences an optional dependency
#90
jakobnissen
closed
1 year ago
0
subset FASTX.FASTQ.Record
#89
Liripo
closed
1 year ago
2
Improve type stability slightly
#88
jakobnissen
closed
2 years ago
1
Add SnoopPrecompile
#87
jakobnissen
closed
2 years ago
1
Try to get preview build to work
#86
kescobo
closed
2 years ago
4
Rollup of a few changes
#85
jakobnissen
closed
2 years ago
1
Use ReTest
#84
kescobo
closed
2 years ago
9
Use ReTest or similar niceness?
#83
jakobnissen
closed
2 years ago
3
Migrate to new Automa release
#82
jakobnissen
closed
1 year ago
0
Make Documenter preview builds work.
#81
kescobo
closed
2 years ago
4
Make constructing records less horribly inefficient
#80
jakobnissen
opened
2 years ago
0
Consider making `.data` fields of records const
#79
jakobnissen
opened
2 years ago
0
Multiline FASTQ records?
#78
jakobnissen
closed
1 year ago
1
No good way to flush writers?
#77
jakobnissen
closed
2 years ago
1
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