issues
search
BioJulia
/
FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
https://biojulia.dev
MIT License
61
stars
20
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
High level file processing
#76
TransGirlCodes
opened
2 years ago
8
[RFC]: Broaden characters allowed in FASTA sequences
#75
jakobnissen
closed
2 years ago
3
Fix missing character in docs example
#74
jakobnissen
closed
2 years ago
1
Include period (.) in valid letters
#73
suyang-nju
closed
2 years ago
7
Clarify that streams take ownership of IO
#72
jakobnissen
closed
2 years ago
1
Erratum in documentation
#71
reganbaucke
closed
2 years ago
3
Documenter clearer that writers/readers take ownership of underlying IO
#70
dan-sprague
closed
2 years ago
3
Change fileld field of records to Int
#69
jakobnissen
closed
2 years ago
2
Rewrite for v2
#68
jakobnissen
closed
2 years ago
12
Update TagBot.yml
#67
CiaranOMara
closed
2 years ago
1
Bump BioSequences/BioSymbols to v3/v5
#66
jakobnissen
closed
2 years ago
1
bump compatibility for BioSymbols v5 and BioSequences v3?
#65
cecileane
closed
2 years ago
4
Update Julia requirement to 1.6
#64
jakobnissen
closed
2 years ago
1
Deal better with missingness
#63
jakobnissen
closed
2 years ago
0
Return header, identifier and desc as string views
#62
jakobnissen
closed
2 years ago
2
Update authors
#61
jakobnissen
closed
2 years ago
1
Disallow record construction from anything
#60
jakobnissen
closed
2 years ago
1
More conservative autodetection of sequence type
#59
jakobnissen
closed
2 years ago
2
Export all user-facing functions
#58
jakobnissen
closed
2 years ago
1
Why export only a few names?
#57
jakobnissen
closed
2 years ago
1
Have accesor functions return views?
#56
jakobnissen
closed
2 years ago
1
Allow parsing FASTA record with no sequence
#55
jakobnissen
closed
3 years ago
2
FASTX.Records need a single-line representation
#54
jakobnissen
closed
1 year ago
1
Transcode between FASTQ & FASTA files
#53
TransGirlCodes
closed
3 years ago
4
Allow trailing whitespace in sequences
#52
jakobnissen
closed
3 years ago
1
TagBot trigger issue
#51
JuliaTagBot
closed
3 years ago
12
Converting FASTQ to FASTA
#50
jtackm
closed
3 years ago
2
Allow trailing newlines for FASTQ files
#49
jakobnissen
closed
3 years ago
1
malformed FASTQ file
#48
jtackm
closed
3 years ago
4
Call fill_ambiguous for FASTQ in all cases
#47
motorny
closed
2 years ago
1
Disallow record construction from anything
#46
jakobnissen
closed
2 years ago
1
Fix header code
#45
jakobnissen
closed
3 years ago
1
FASTQ example added
#44
BioTurboNick
closed
3 years ago
2
Model good behavior with do block syntax
#43
BioTurboNick
closed
3 years ago
1
Use SIMD code generator
#42
jakobnissen
closed
2 years ago
3
Add quality and sequence iterator
#41
jakobnissen
closed
3 years ago
1
Performance comparison with Rust
#40
jonathanBieler
closed
3 years ago
5
Fix FASTQ line counting bug
#39
jakobnissen
closed
3 years ago
1
Fix description newline bug
#38
jakobnissen
closed
3 years ago
1
Refactor tests
#37
jakobnissen
closed
2 years ago
0
Avoid copying data when extracting sequence
#36
jakobnissen
closed
4 years ago
2
Subset fastq record using string syntax
#35
tp2750
closed
3 years ago
11
Subsetting a FASTQ record
#34
tp2750
closed
3 years ago
2
Add header function
#33
jakobnissen
closed
4 years ago
1
Is our FASTA format idiosyncratic?
#32
jakobnissen
closed
3 years ago
5
Add constant time fasta index seeking [NEED REVIEW]
#31
jakobnissen
closed
3 years ago
4
Simplify seekrecord
#30
jakobnissen
closed
4 years ago
1
so slowly of extract sequence by coord
#29
panxiaoguang
closed
2 years ago
3
Fix windows newline bug (issue 25)
#28
jakobnissen
closed
4 years ago
1
Bugfix: Make trailing FASTQ line optional
#27
jakobnissen
closed
4 years ago
2
Previous
Next