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CellProfiler
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CellProfiler-plugins
Community-contributed and experimental CellProfiler modules.
http://plugins.cellprofiler.org/
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Cellpose plugin using a subprocess docker
#198
callum-jpg
closed
1 year ago
3
Expand documentation
#197
ErinWeisbart
closed
1 year ago
0
stardist plugin does not free gpu memory
#196
sunyi000
opened
1 year ago
0
CP-plugins link is currently dead
#195
hinerm
closed
1 year ago
2
move Instructions to new format
#193
ErinWeisbart
closed
1 year ago
1
Cleanup active plugins
#192
ErinWeisbart
closed
1 year ago
2
Reorganize the repository
#191
ErinWeisbart
closed
1 year ago
0
Add doi's to plugins in use
#190
fefossa
closed
1 year ago
1
Ensure all plugins user-ready
#189
ErinWeisbart
closed
1 year ago
1
Create test pipelines
#188
ErinWeisbart
opened
1 year ago
0
Overhaul Plugins documentation
#187
ErinWeisbart
closed
1 year ago
1
Same functionality, but no pandas
#185
domchom
closed
1 year ago
1
RunDeepProfiler
#182
fefossa
opened
1 year ago
11
Add runomnipose plugin.
#181
kevinjohncutler
closed
1 year ago
0
classifypixelsunet - file signature not found
#180
wynstep
closed
1 year ago
1
Example pipeline for compensatecolors
#179
gwaybio
opened
1 year ago
8
Update Cellpose model
#178
jenna-tomkinson
closed
1 year ago
3
Functionality for RunCellpose to be used in an image-based analysis pipeline
#177
jenna-tomkinson
closed
1 year ago
4
Error when installing CellProfiler and its plugins from source on Apple M1 chip
#176
ML33M
opened
1 year ago
2
Apple M1 arm64: PackagesNotFoundError:- tensorflow-deps
#175
ML33M
closed
1 year ago
2
Add spacing to DistanceTransfrom
#174
bdiazroh
closed
1 year ago
0
Update cellprofiler_plugins_macM1.yml
#173
mccruz07
closed
1 year ago
0
Update Installation_instructions_for_CellProfiler_M1.md
#172
mccruz07
closed
1 year ago
0
Implementing a DeepProfiler Plugin
#171
jenna-tomkinson
opened
1 year ago
5
Problems with installing runstardist in Cellprofiler
#170
BioMedMS
closed
1 year ago
1
Added "remove_edge_masks" function to RunCellpose module
#169
jenna-tomkinson
closed
1 year ago
1
Add "Remove Edge Masks" functionality to RunCellpose plugin
#168
jenna-tomkinson
closed
1 year ago
1
Cellpose Plugin -> Model Options for Cellpose 2.0 Unavailable
#167
jenna-tomkinson
closed
1 year ago
2
Plugins with external dependencies CAN work with binary CP distributions
#166
hinerm
closed
1 year ago
3
Module names must match file/class names for plugins to work from compiled binary
#165
hinerm
opened
1 year ago
0
Update dependencies
#164
hinerm
closed
1 year ago
1
Change requirements.txt
#163
bdiazroh
closed
1 year ago
0
CellProfiler crash upon RunCellPose on CPU
#162
julieaaj
closed
1 year ago
1
Installation and Functionality Problems with Cellpose Plugin
#161
jenna-tomkinson
closed
1 year ago
4
Error in sys.excepthook while running cellprofiler in headless mode with CellPose as a plugin
#160
bethac07
opened
1 year ago
0
Added validate_module function to raise ValidationError
#159
fefossa
closed
1 year ago
1
RunCellpose warning for custom model not found
#158
fefossa
closed
1 year ago
1
Add plugins and update RunCellpose
#157
bdiazroh
closed
1 year ago
3
classifypixelsunet weights file link
#156
solo00418
closed
1 year ago
1
Fix some issues with use_gpu and bad default settings for 3D
#155
rsenft1
closed
2 years ago
0
TypeError in RunCellpose in GPU mode
#154
braymp
opened
2 years ago
5
Added written instructions for runCellpose and runStardist
#153
rsenft1
closed
2 years ago
0
fix gpu test
#152
bdiazroh
closed
2 years ago
0
omnipose fix
#151
bdiazroh
closed
2 years ago
0
Update settings
#150
bdiazroh
closed
2 years ago
0
Add Omnipose as part of the RunCellpose plugin
#149
bdiazroh
closed
2 years ago
0
RunImageJScript: improve param behavior
#148
hinerm
closed
1 year ago
2
Cellpose new version incompatible with runcellpose
#147
jesusdpa1
closed
2 years ago
0
plugin added to module folder but doesn't see it in cellprofiler modules
#146
MariamFa
closed
1 year ago
1
Cannot find my plugin in Other module category
#145
Tiany1Pan
closed
2 years ago
1
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