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Clinical-Genomics
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genotype
Simple genotype comparison of VCF files
http://taboo.readthedocs.org/en/latest/
MIT License
8
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2
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fix broken master
#73
henrikstranneheim
opened
8 months ago
1
Fix tests
#72
henrikstranneheim
closed
8 months ago
1
Update linting
#71
henrikstranneheim
closed
8 months ago
1
feat(codeowner)
#70
henrikstranneheim
closed
8 months ago
1
Not matching CG sequencing no-call (unknown) variants with MAF results
#69
SofiaOtero
opened
1 year ago
9
Bug(incorrect matching of data)
#68
karlnyr
closed
1 year ago
1
Bump flask from 1.1.1 to 2.3.2
#67
dependabot[bot]
opened
1 year ago
1
Added a check for user-defined sample_id before logging it.
#64
ChrOertlin
closed
1 year ago
3
Improved error message for multiple SNP variants found in fetch_snp
#62
ChrOertlin
closed
1 year ago
4
Update error output to be more specific in the case of multiple SNPs variants
#61
Karl-Svard
closed
1 year ago
0
feat(update): GitHub actions version
#60
henrikstranneheim
closed
1 year ago
2
Update DEPLOYMENT.md
#59
henrikstranneheim
closed
1 year ago
2
Bump numpy from 1.19.2 to 1.22.0
#58
dependabot[bot]
opened
1 year ago
1
Bump jinja2 from 2.11.2 to 2.11.3
#57
dependabot[bot]
opened
1 year ago
1
Update DEPLOYMENT.md
#56
henrikstranneheim
closed
1 year ago
4
Feat(CLI): List and inactivate users
#54
patrikgrenfeldt
closed
2 years ago
2
Version
#52
Mropat
closed
3 years ago
1
Cgvm preparations
#51
Mropat
closed
3 years ago
1
Updates deployment instructions for deployment with CG
#50
moonso
closed
1 year ago
2
Create a REST api
#49
moonso
opened
4 years ago
0
Add support for checking all samples on a plate from UI
#48
moonso
opened
4 years ago
0
Remove MIP parsing support and update test env
#47
moonso
closed
4 years ago
1
Add support for analysing all samples in a Plate from CLI
#46
moonso
opened
4 years ago
0
Add Plate support when uploading from CLI
#45
moonso
opened
4 years ago
0
Remove support for parsing old MIP files
#44
moonso
opened
4 years ago
0
Match should exit gracefully
#43
moonso
opened
4 years ago
0
genotype is built around deprecated packages
#42
moonso
opened
4 years ago
0
move to mkdocs
#41
moonso
closed
4 years ago
1
Switch to github actions
#40
moonso
closed
4 years ago
1
Move CLI code
#39
moonso
closed
4 years ago
2
move CI reqs to CI config
#38
patrikgrenfeldt
closed
4 years ago
2
Update pip for clinical-db in .travis.yml
#37
patrikgrenfeldt
closed
4 years ago
2
Installation should work on Clinical-db
#36
patrikgrenfeldt
closed
4 years ago
1
New lib path
#35
mayabrandi
closed
4 years ago
0
Pr template
#34
mayabrandi
closed
4 years ago
1
Bugfix
#33
mayabrandi
closed
4 years ago
4
Add jobs to CI build
#32
patrikgrenfeldt
closed
4 years ago
2
cleaning up
#31
mayabrandi
closed
4 years ago
0
Trending dev
#30
mayabrandi
closed
4 years ago
3
handle alleles separated by '|' in MIP7
#29
patrikgrenfeldt
closed
5 years ago
1
Trending
#28
mayabrandi
closed
4 years ago
24
Changed oauth scope
#27
patrikgrenfeldt
closed
5 years ago
0
Brings genotype uptospeed
#26
patrikgrenfeldt
closed
5 years ago
0
Force analysis upload option
#25
northwestwitch
closed
6 years ago
3
fixing app requirements for python 3.6
#24
northwestwitch
closed
6 years ago
1
Error while launching the server with "genotype serve"
#23
northwestwitch
closed
6 years ago
5
No housekeeper
#22
robinandeer
closed
7 years ago
0
add plates table to link analyses
#21
robinandeer
closed
7 years ago
0
Add option to flag a plate as complete
#20
robinandeer
closed
6 years ago
1
compare two vcf files
#19
silvius76
closed
6 years ago
1
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