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CoBrALab
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optimized_antsMultivariateTemplateConstruction
A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support
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Jobs failing due to not requesting enough resources in SLURM
#107
j97kang
closed
1 week ago
8
Change average norm parameter to 1 in modelBuild.sh.
#106
achusuresh2
closed
2 weeks ago
3
Matrix/Transforms info
#104
gdevenyi
opened
3 weeks ago
0
Improve starting
#103
gdevenyi
closed
3 weeks ago
0
Relocate jobs and logfiles for dbm vs modelbuild
#102
gdevenyi
closed
3 weeks ago
0
Update README.md
#101
hfxcarl
closed
5 months ago
1
Add commonspace to subjectspace resampling
#100
jeremie-fouquet
closed
1 month ago
0
Steal shape-updating from OMM-1
#99
gdevenyi
opened
6 months ago
0
Add starting target to twolevel
#98
gdevenyi
closed
6 months ago
0
BUG: twolevel maskaverage stage runs too early on first run
#97
gdevenyi
opened
7 months ago
0
Add a backwards option to (twolevel_)commonspace_resample.sh
#96
jeremie-fouquet
closed
3 weeks ago
4
Properly handle no final-target-mask.
#95
gdevenyi
opened
8 months ago
0
Parallelize IO in python
#94
gdevenyi
opened
9 months ago
0
timeseries and warp fix
#93
RyanHaniff
closed
6 months ago
0
Implement streaming median/MAD implementation
#92
gdevenyi
opened
9 months ago
0
Second-level initialization fails if using bootstrapping
#91
gdevenyi
opened
9 months ago
0
Welford optimization
#90
RyanHaniff
closed
9 months ago
3
Add "launch detail" first info line
#89
gdevenyi
opened
10 months ago
0
Welford method algo
#88
RyanHaniff
closed
9 months ago
1
Implement robust mode of mincbigaverage
#87
gdevenyi
opened
10 months ago
0
Implement dependent submodule
#86
gdevenyi
closed
10 months ago
0
Properly implement passing down masks in twolevel modelbuild
#85
gdevenyi
closed
10 months ago
0
Check for parallel command
#84
gdevenyi
closed
9 months ago
1
Add feature to manually specify registration pyramid
#83
gdevenyi
closed
10 months ago
0
Fix empty lists in old bash
#82
gdevenyi
closed
10 months ago
0
Improve file existence checking
#81
gdevenyi
opened
10 months ago
0
Bug when no starting target is supplied
#80
jeremie-fouquet
closed
10 months ago
0
two-level DBM question
#79
araikes
closed
10 months ago
1
Investigate memory-sparing average implementations
#78
gdevenyi
closed
9 months ago
3
Improve sharpening implementation
#77
gdevenyi
opened
1 year ago
0
Implement robust options for averaging warps
#76
gdevenyi
opened
1 year ago
0
Implement robust averaging in python affine average code
#75
gdevenyi
closed
10 months ago
0
Do away with voxel-wise affine Jacobians
#74
gdevenyi
opened
1 year ago
3
Investigate alternative average-transform shape update
#73
gdevenyi
opened
1 year ago
0
Investigate SmoothDisplacementField vs SmoothImage for Jacobians
#72
gdevenyi
opened
1 year ago
0
When using python averager, generate stddev outputs
#70
gdevenyi
closed
9 months ago
1
Implement classic ants pyramid for comparisons
#69
gdevenyi
closed
9 months ago
1
Improve checking for completion of steps
#66
gdevenyi
closed
1 year ago
1
Resampling to common space
#65
gdevenyi
closed
12 months ago
0
Use submodule for required scripts
#64
gdevenyi
closed
10 months ago
0
Affine Registration Failures
#63
araikes
closed
1 year ago
10
Padding for initial average
#62
araikes
closed
1 year ago
4
Try to rewrite modelbuild_averager.py code to be more memory effcient
#61
gdevenyi
closed
1 year ago
1
Initial implementation of volgenmodel
#60
gdevenyi
closed
1 year ago
1
Handle slightly malformed CSVs
#59
gdevenyi
opened
1 year ago
0
Move sharpening to last step of average/shape update
#58
gdevenyi
opened
1 year ago
0
Properly handle verbose everywhere
#57
gdevenyi
opened
1 year ago
0
Produce comprehensive QC images
#56
gdevenyi
opened
1 year ago
1
added required scripts for minc-toolkit-extras
#55
niksirbi
closed
1 year ago
2
Implement transform interpolation and averaging using proper Lie Group Algebra
#54
gdevenyi
closed
1 year ago
2
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