issues
search
ConesaLab
/
SQANTI3
Tool for the Quality Control of Long-Read Defined Transcriptomes
GNU General Public License v3.0
198
stars
49
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
[BUG] sqanti3_qc.py :: use sys.executable instead of plain python3 call for inner command
#354
EricDeveaud
opened
17 hours ago
2
[BUG] qanti3_filter.py :: invalid Rscript detection
#353
EricDeveaud
opened
17 hours ago
0
[BUG] No such file or directory
#351
handesome
opened
2 days ago
2
[BUG] No *classification.txt and *junctions.txt files generated
#349
Kristopher02
opened
6 days ago
3
Alternative tools for orf prediction
#347
YIGUIz
opened
1 week ago
0
Fix: TSS and TTS now is corrected and documented
#345
Fabian-RY
closed
2 weeks ago
0
Sqanti3 wrapper available
#344
Fabian-RY
closed
2 weeks ago
0
[BUG] SQANTI filter not producing output
#342
sparthib
closed
1 month ago
2
FIX: gtf.cds.gff is now created when --chunks options is used
#341
Fabian-RY
closed
1 month ago
0
[BUG] Running SQANTI3_QC with chunks and no chunks produces differences in classification.txt
#340
Fabian-RY
opened
1 month ago
0
FIX: corrected unchecked existance of a variable in report when --skipORF is used
#339
Fabian-RY
closed
1 month ago
0
[BUG] An error occurred while installing package bioconda::bioconductor-genomeinfodbdata-1.2.11-r43hdfd78af_1
#338
emsisson
closed
1 month ago
1
Bugfix: corrected the sign in difference to TTS/TSS
#337
Fabian-RY
closed
1 month ago
1
FIX: transcripts without known strands (with '.' strand) are redirected
#336
Fabian-RY
closed
1 month ago
0
[BUG] Incomplete SQANTI3_filter output
#335
zhangkn3
closed
1 month ago
5
[BUG] IndexError: list index out of range
#334
YIGUIz
closed
1 month ago
3
Fixes report failing when some some structural categories (mainly FSM, ISM, NIC or NNIC) were missing
#332
Fabian-RY
closed
1 month ago
0
Modify write_collapsed_GFF_with_CDS in sqanti3_qc.py
#331
sbresnahan
opened
1 month ago
0
Add NA replacement value for ratio_TSS column in ML Rescue
#330
aarzalluz
closed
1 month ago
1
[BUG] IndexError: list index out of range
#329
yerry77
closed
1 month ago
4
Added compatibility for .gz compressed fasta/fastq isoforms to SQANTI3_QC
#326
Fabian-RY
closed
2 months ago
0
Optionally ignore errors
#324
bschiffthaler
closed
1 month ago
0
Dockerfile
#323
Fabian-RY
closed
2 months ago
0
[BUG] sqanti3_filter.py is not filtering according to my custom rules
#322
dudududu12138
opened
2 months ago
1
Sqanti reads
#321
carolinamonzo
closed
2 months ago
0
sqanti3_rescue - tags transcript_id, gene_id are absent from the attribute field [BUG]
#317
cathycoutu
opened
3 months ago
1
Match `sqanti3_filter.py`'s no output prefix behavior in `sqanti3_rescue.py`
#316
skagawa2
opened
3 months ago
0
Missclassification of Genic Intron transcripts
#315
liniguez
closed
3 months ago
1
[BUG] After running filter, the second column of the filtered gtf file is always `pacbio`, even if I'm using ONT data.
#314
dudududu12138
closed
3 months ago
2
[BUG]
#313
xiekunwhy
closed
3 months ago
2
[FEATURE] support gzip'd input fastq files
#312
nick-youngblut
closed
2 months ago
0
[BUG] pip install ultra-bioinformatics => Could not build wheels for edlib
#311
nick-youngblut
closed
4 months ago
7
The installation of SQANTI3-5.2.1 encountered an error
#310
biochristmas
closed
4 months ago
3
[BUG] Error running qc
#309
nkliutx
closed
4 months ago
1
Issue generating rules filter report.
#304
tinatucci
closed
4 months ago
2
Correction of the classfication of mono-exons
#303
alexpan00
closed
5 months ago
0
ML Filter output: Missing files, inverted ROC curve x-axis.
#301
klenhart
closed
4 months ago
4
FileNotFoundError: Genome file "/chr_order.txt" does not exist
#300
francicco
closed
5 months ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'sqanti 3_output_splits/0/sqanti3_output_corrected.faa'
#298
lscdanson
closed
6 months ago
18
Unique STAR run when running multiple chunks
#296
carolinamonzo
closed
6 months ago
5
[BUG] squanti qc
#295
dawangran
closed
6 months ago
6
GeneMark issue
#294
ghost
closed
6 months ago
1
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x8b in position 1: invalid start byte
#291
TingQi2020
closed
6 months ago
3
sqanti_filter.py ML classifier variable importance table output error
#290
jelfman
closed
6 months ago
9
How are fusions defined by SQANTI
#287
tky199996
closed
7 months ago
1
[BUG] list index out of range
#284
dawangran
closed
7 months ago
1
Fixed a bug on classification of genic_intron (issue #255)
#283
alexpan00
closed
7 months ago
0
default rule filter also filtered out mono-exonic transcripts
#282
MengjunWu
opened
7 months ago
0
SQANTI rules filtering with complex identifiers
#281
hyeon9
closed
7 months ago
2
Recover isoforms shorter than min_ref_len.
#280
lkondratova
closed
7 months ago
0
Next