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FOI-Bioinformatics
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CanSNPer2
CanSNPer2: A toolkit for SNP-typing bacterial genomes.
GNU General Public License v3.0
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add NEXT FREE SNP, B.316, to the F.tularensis database for publication
#42
BigNianNGS
opened
1 week ago
1
Software hang when dealing with large custom SNP-databases
#41
jaclew
opened
9 months ago
0
Changed code regarding multiprocessing Queue in CanSNPer2.py
#40
jaclew
closed
9 months ago
0
Missing calls in database with custom SNPs
#39
jaclew
opened
10 months ago
0
fixed unintented break of loop and input checking for duplicate positions
#38
jaclew
closed
9 months ago
1
problem when downloading references for bacillus_anthracis.db
#37
rjsorr
opened
11 months ago
0
NA to stdout but in summary its called
#36
CarolineOhrman
opened
1 year ago
0
Missing output in *_snps.txt when SNP path is NA
#35
CarolineOhrman
opened
1 year ago
0
root named "-root- -cellular organism"
#34
CarolineOhrman
opened
1 year ago
2
more references in folder
#33
CarolineOhrman
opened
1 year ago
0
A node named root is hardcoded
#32
CarolineOhrman
opened
1 year ago
0
tree file with ";" insted of tabs will lead to missing node warnings
#31
CarolineOhrman
opened
1 year ago
0
issue with references
#30
joergFLI
closed
1 year ago
4
No valid start SNP found
#29
CarolineOhrman
closed
2 years ago
2
Error with gaps in fasta file
#28
AleSR13
opened
3 years ago
7
Missing (blue) nodes small in pdf
#27
CarolineOhrman
opened
4 years ago
0
clean ambiguous nucleotides in submitted sequence
#26
Gilles179
opened
4 years ago
0
Final call not correct
#25
CarolineOhrman
opened
4 years ago
0
summary file: missing results
#24
Gilles179
opened
4 years ago
2
Include contig and position in SNP list
#23
CarolineOhrman
opened
4 years ago
0
format of --annotation snp input
#22
CarolineOhrman
opened
4 years ago
0
Genomes with multiple sequences
#21
davve2
opened
4 years ago
0
Download databases
#20
davve2
opened
4 years ago
0
Installation issues
#19
druvus
opened
4 years ago
10
Strict
#18
davve2
closed
4 years ago
0
Summary
#17
davve2
closed
4 years ago
0
Summary
#16
davve2
closed
4 years ago
1
Correct for mauve error
#15
davve2
closed
4 years ago
1
Add self test for conda
#14
davve2
closed
4 years ago
0
When a genome fail alignment to one ref, false result in tree pdf
#13
CarolineOhrman
closed
4 years ago
1
Add ref and genome to progressiveMauvewarning on stdout
#12
CarolineOhrman
opened
4 years ago
0
Skip processed
#11
davve2
closed
4 years ago
0
Add min_required_hits option for smaller trees
#10
davve2
closed
4 years ago
0
Mauve bugfix 20200323
#9
davve2
closed
4 years ago
0
Keep going function
#8
davve2
closed
4 years ago
1
Wrong output in "called_snps" file
#7
CarolineOhrman
closed
4 years ago
1
More contrast of node colors in tree pdf
#6
CarolineOhrman
closed
4 years ago
1
Output, export and --keep_temp when running --skip_mauve
#5
CarolineOhrman
closed
4 years ago
1
logs dir need to exist
#4
CarolineOhrman
closed
4 years ago
0
conda flextaxd not compatible
#3
CarolineOhrman
closed
4 years ago
1
qt.qpa.xcb: could not connect to display
#2
CarolineOhrman
closed
4 years ago
1
tmp dir must exist
#1
CarolineOhrman
closed
4 years ago
1