Gaius-Augustus TSEBRA issues

Gaius-Augustus / TSEBRA

TSEBRA: Transcript Selector for BRAKER

46 stars 5 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Does get_longest_isoform.py keep ab initio predictions?

#52 tinameiring closed 3 weeks ago
1
Combine BRAKER3 and Galba annotation for new, non-model genome

#51 YanisChrys opened 4 months ago
0
Combining runs of BRAKER3 with short and long-read RNA-seq

#50 danielwood1992 opened 4 months ago
0
Execution issue still persists with ```get_longest_isoform.py```

#49 sahoo-rk opened 6 months ago
1
Fixing bug https://github.com/Gaius-Augustus/BRAKER/issues/752

#48 KatharinaHoff closed 7 months ago
0
expanding busco lineage name with _odb10 if not present, fragile, nee…

#47 KatharinaHoff closed 7 months ago
0
Still need to remove redundant sequences after gtf files recombination?

#46 Flyase opened 7 months ago
1
Confusion about the default config parameters

#45 sjannielefevre opened 8 months ago
0
updating compleasm dependency description

#44 KatharinaHoff closed 8 months ago
0
Compleasm

#43 KatharinaHoff closed 8 months ago
0
merging BUSCOs on top of braker.gtf

#42 KatharinaHoff closed 8 months ago
0
adding that augustus.hints.aa could also be located in the workingdir…

#41 KatharinaHoff closed 9 months ago
0
Compleasm

#40 KatharinaHoff closed 9 months ago
0
The TSEBRA result to UCSC or Ensemble type

#39 ld9866 opened 10 months ago
1
`--ignore_tx_phase` on branch long_reads

#38 gbdias closed 10 months ago
2
Add Bioconda and usegalaxy.eu badge

#37 bgruening closed 10 months ago
0
long_reads branch issue

#36 gbdias opened 11 months ago
0
Combining TSEBRA Output with other Annotations in GFF format

#35 NicMAlexandre opened 1 year ago
1
An error occurred while running 'get_longest_isoform.py'

#34 MICHELLE-LMX closed 10 months ago
3
help with gff issue

#33 LarsGab closed 1 year ago
0
Transcripts assigned separate gene IDs after combining GTFs

#32 GwynHN closed 10 months ago
3
genomethreader

#31 bijendrabio closed 10 months ago
2
where is the gff2aa.pl script?

#30 joleneyue closed 10 months ago
2
New default.cfg increased duplicated BUSCO

#29 Huiting120 closed 10 months ago
1
TSEBRA failed with keep_ab_initio.cfg (but worked with default.cfg)

#28 Huiting120 opened 1 year ago
1
Braker3

#27 LarsGab closed 1 year ago
0
Contained Gene bug

#26 nhartwic closed 1 year ago
3
Number of genes predicted with TSEBRA is more while BUSCO score remains the same

#25 ShakunthalaNatarajan opened 1 year ago
0
Tsebra gtf2aa.pl predicting proteins with in-frame stop codons

#24 nllg closed 10 months ago
1
BUSCO completeness decrease after tsebra

#23 yimingweng closed 10 months ago
2
How to convert gtf file from TSEBRA to gff3 file as EVM input？

#22 yweii closed 10 months ago
4
Selecting protein sequences after merging annotation sets; what do the anno1 and anno2 prefixes mean in gtf file?

#21 robertwhbaldwin closed 10 months ago
1
How to get a full merge of protein-based and RNA-seq-based predictions without rejecting any?

#20 SchwarzEM closed 10 months ago
2
How to improve the BUSCO score of the resulted predictions?

#19 bioinformaticspcj opened 2 years ago
6
TSEBRA for merging several evidences

#18 marco91sol closed 10 months ago
1
How can we translate our TSEBRA result gtf to NCBI gtf

#17 ld9866 closed 2 years ago
3
Non-overlapping isoforms

#16 alexcorm closed 2 years ago
3
Gene model encompasses multiple unique genes without overlapping transcripts

#15 ckeeling closed 2 years ago
4
Inconsistencies in transcript_ID and gene_ID

#14 minhasbushra closed 2 years ago
2
Complementing curated genes with TSEBRA + other concerns

#13 nicmoya closed 2 years ago
12
braker2 - proteins

#12 minhasbushra closed 2 years ago
2
evidence.AttributeMissing: Source of Hint is missing

#11 yplee614 closed 2 years ago
0
how can I add braker-generated UTR features into TSEBRA out ?

#10 tinyfallen closed 2 years ago
11
conflicting parents with gtf2gff.pl

#9 conchoecia closed 2 years ago
2
detailed document for the configure setting

#8 sotuamax closed 2 years ago
5
How to get aa and CDS sequences

#7 SC-Duan closed 3 years ago
7
benchmarking TSEBRA with BUSCO: my results are not good

#6 amvarani closed 3 years ago
7
The Genemark and Augustus profile from TSEBRA

#5 wyim-pgl closed 10 months ago
2
TSEBRA generates gtf file without 'gene' meta-feature in the third column

#4 dieunelderilus closed 3 years ago
1
Naming is incorrect

#3 sarjopp closed 3 years ago
1