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GilbertLabUCSF
/
ScreenPro2
[This is an archived repository, see the current version in Arc Institute GitHub]
https://github.com/ArcInstitute/ScreenPro2
MIT License
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release v0.2.5
#29
abearab
closed
8 months ago
0
Function to find and filter out low count oligos
#28
abearab
closed
8 months ago
0
Transparent implementation of phenotype calculation and statistical analysis methods
#27
abearab
closed
8 months ago
0
Z-score normalization relative to negative control distribution
#26
abearab
closed
8 months ago
0
Introduce .pdata matrix as part of ScreenPro object
#25
abearab
closed
8 months ago
0
How to use growth values (population doublings/doubling differences)
#24
abearab
closed
8 months ago
2
Improve ReadTheDocs format
#23
abearab
closed
8 months ago
4
added docs, unit tests, and a vs-code devcontainer; updated the ci pipeline
#20
nick-youngblut
closed
9 months ago
0
Improve statistical test methods
#19
abearab
closed
8 months ago
0
Include commonly used CRISPR library tables
#18
abearab
closed
8 months ago
0
Flow-based screens
#17
abearab
closed
8 months ago
1
Principal component analysis (PCA) module
#16
abearab
closed
8 months ago
1
Drug perturbation screens
#15
abearab
closed
8 months ago
1
Label `non-targeting` guides to `pseudo_###` through random selection
#14
abearab
closed
11 months ago
0
Sort and find top `n` guide per gene
#13
abearab
closed
8 months ago
0
add multiple methods for `getDelta` function – e.g. `log2`, `log10`, etc.
#12
abearab
closed
10 months ago
1
Implement workflows for common CRISPR Screen platforms and use cases
#11
abearab
closed
8 months ago
0
`pip` and `conda` installation
#10
abearab
closed
8 months ago
4
Get `non-targeting` label as input
#9
abearab
closed
1 year ago
0
Include pathway analysis scripts
#8
abearab
closed
9 months ago
0
Bump wheel from 0.33.6 to 0.38.1 in /docs
#7
dependabot[bot]
closed
1 year ago
2
Design `ScreenPro` object
#6
abearab
closed
9 months ago
0
FDR Calculation
#21
abearab
closed
8 months ago
2
INC module, Including Negative Controls
#22
abearab
closed
11 months ago
2
First stable version
#1
abearab
closed
8 months ago
1
Error in "Collapsing transcript scores to gene scores"
#3
abearab
closed
1 year ago
0