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Graylab
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IgFold
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
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The Heavy chain size of 744 which is longer than the existing size。how can I solve the problem？
#70
HANSEN-cpu
opened
1 month ago
0
torch version
#69
a30221274
opened
5 months ago
0
IgFold Colab
#68
alba-ug
opened
5 months ago
0
Predicted structuers not available (wget failed: ... connection refused); also "https://data.graylab.jhu.edu" unreachable
#67
marinegor
closed
5 months ago
1
TypeError: Unit "kilocalorie/mole" is not compatible with Unit "kilojoule/(nanometer*mole)".
#66
MQM1608
opened
5 months ago
0
ValueError: min() arg is an empty sequence
#65
johnsnowgo
closed
2 weeks ago
7
Documentation improvements
#64
yshen25
opened
9 months ago
0
Circular import errors
#63
BobbyLangan
opened
11 months ago
1
Where are pretrained models
#62
sangzhe
opened
11 months ago
1
Corrupt structures
#61
lhatsk
closed
11 months ago
2
How to assign a different GPU?
#60
TangYiChing
opened
12 months ago
1
sequence-level embedding
#59
johnnytam100
opened
1 year ago
0
Commercial license
#58
benme01
closed
1 year ago
2
IgFold Colab
#57
jskim217
opened
1 year ago
1
predict the structure using one single seq: H + linker + V
#56
zhendejuzi
closed
1 year ago
2
it seems a bug in save_PDB
#55
zhendejuzi
closed
1 year ago
1
Doubts on the usage of PDB templates
#54
alexandrefassio
opened
1 year ago
0
ValueError: min() arg is an empty sequence
#53
xy127
closed
1 year ago
1
Chain breaks after Rosetta refinement
#52
ta-rom
closed
1 year ago
1
abnumber.exceptions.ChainParseError: Found 2 antibody domains in sequence:
#51
Demoyhy
closed
1 year ago
2
colab notebook ModuleNotFoundError
#50
Pellarin
opened
1 year ago
2
fix the align_mask bug when calculating the prmsd_loss
#49
yaowensnf
opened
1 year ago
1
I can't get the weight of the model, and after deploying the model according to the process provided by the author, the test demo can't run through
#48
huishao007
opened
1 year ago
4
Update README.md
#47
jeffreyruffolo
closed
1 year ago
0
Update colab python310
#46
jeffreyruffolo
closed
1 year ago
0
is it possible to run training ourselves?
#45
rsree-23
opened
1 year ago
0
embed method
#44
ChengLeiYu-Maker
opened
1 year ago
0
Multiple Sequence Simultaneous Inference
#43
ChengLeiYu-Maker
opened
1 year ago
2
When I used IgFold, I got this error：Bio.PDB.PDBExceptions.PDBConstructionException: Invalid or missing coordinate(s) at line 1.
#42
YANG-LQ
closed
1 year ago
1
Set device
#41
MacroHongZ
closed
1 year ago
0
runtimeerror : error(s) in loading state_dict for IgFold:
#40
Samuel-gwb
closed
1 year ago
3
pre-trained models not found
#39
Samuel-gwb
closed
1 year ago
2
google colab error
#38
Samuel-gwb
closed
1 year ago
0
atom serial number duplicates after the TER record in output PDB
#37
px172
closed
1 year ago
1
README.md typos: #antibody-sequence-embedding
#36
seanryanchan
closed
1 year ago
1
Error: AbNumber not installed. Please install AbNumber to use renumbering
#35
suhailislam
opened
1 year ago
1
ModuleNotFoundError: No module named 'abnumber'
#34
linuxonly801
closed
1 year ago
2
IgFold.py RuntimeError
#33
px172
closed
1 year ago
1
Fail to download Pretrained Weights
#32
linuxonly801
closed
1 year ago
2
ValueError: min() arg is an empty sequence
#31
linuxonly801
closed
1 year ago
4
RuntimeError: indices should be either on cpu or on the same device as the indexed tensor (cpu)
#30
linuxonly801
closed
1 year ago
3
ModuleNotFoundError: No module named 'abnumber'
#29
kimdn
closed
1 year ago
1
AttributeError: module 'torch.linalg' has no attribute 'solve'
#28
kimdn
closed
1 year ago
2
Error in Colab Notebook: `GLIBCXX_3.4.29' not found
#27
ajasja
closed
1 year ago
14
Runtimeerror in ubuntu
#26
liuyuan0546
opened
1 year ago
0
pytorch3d version missing
#25
dannykwells-sab
closed
1 year ago
1
Installation failure and IgFold cannot run on Google Colab
#24
WenTao-tust
closed
1 year ago
3
No igfold_4.ckpt ?
#23
shubihu
closed
1 year ago
4
python version mismatch
#22
XiaoTigerHAO
closed
1 year ago
1
warning
#21
leiqian-nmsu
closed
1 year ago
0
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