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ICB-DCM
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pyPESTO
python Parameter EStimation TOolbox
https://pypesto.readthedocs.io
BSD 3-Clause "New" or "Revised" License
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Code checks not accurately reflects the quality of code
#1304
PaulJonasJost
closed
4 months ago
5
Remove flake8-black
#1303
PaulJonasJost
closed
7 months ago
1
Black formatting update
#1302
PaulJonasJost
closed
7 months ago
0
Decouple PEtab and AMICI
#1301
dilpath
opened
7 months ago
1
Black formatting
#1300
PaulJonasJost
closed
7 months ago
1
Prepare release v0.4.2
#1299
PaulJonasJost
closed
7 months ago
2
Release v0.4.2
#1298
PaulJonasJost
closed
7 months ago
1
Semiquantitative: Robust regularization calculation
#1297
Doresic
closed
7 months ago
4
pypesto.ensemble.ensemble.EnsemblePrediction.compute_chi2 incorrectly assumes all edatas have equal number of timepoints
#1296
dweindl
opened
7 months ago
0
Doc: Update feature overview
#1295
dweindl
opened
7 months ago
0
Decouple pypesto.ensemble.ensemble.Ensemble from pypesto.predict.amici_predictor.AmiciPredictor
#1294
dweindl
opened
7 months ago
1
EnsemblePrediction: remove "no predictor" warning
#1293
dweindl
closed
7 months ago
1
Doc: Update references
#1292
dweindl
closed
3 months ago
1
Decouple `AmiciPredictor` from `AmiciObjective`
#1291
dweindl
opened
7 months ago
1
Fix time axis in pypesto.visualize.sampling.sampling_prediction_trajectories
#1290
dweindl
opened
7 months ago
0
Add dedicated example for ensembles
#1289
dweindl
opened
7 months ago
0
Add parameter labels to `pypesto.visualize.ensemble.ensemble_identifiability`
#1288
dweindl
opened
7 months ago
0
Select: use petab_select method to set estimated parameters
#1287
dilpath
closed
7 months ago
1
doc/example/store.ipynb timeout
#1286
dweindl
closed
4 months ago
1
Set only active maintainers as default codeowners
#1285
PaulJonasJost
closed
7 months ago
2
Support ipopt with gradient approximation
#1284
MerktSimon
closed
4 months ago
0
PetabImporter: version-specific amici model directories
#1283
dweindl
closed
7 months ago
1
Problem: add inner problem names, bounds and hierarchical flag
#1282
Doresic
closed
7 months ago
2
test/julia/test_pyjulia.py:62: AssertionError
#1281
dweindl
opened
8 months ago
0
Add warmstart option for (sac)ess
#1280
dweindl
opened
8 months ago
0
example/workflow_comparison.ipynb - TypeError
#1279
dweindl
closed
4 months ago
1
Doc: Clear notebook output (fixed parameters, prior definition, store)
#1278
dweindl
closed
8 months ago
1
Doc: Use clang on RTD
#1277
dweindl
closed
8 months ago
1
Doc: Clear getting-started notebook output
#1276
dweindl
closed
8 months ago
1
Doc: Clear amici and conversion reaction notebook output
#1275
dweindl
closed
8 months ago
1
Doc: Clear hierarchical optimization notebook output
#1274
dweindl
closed
8 months ago
5
Log-friendly tqdm/progress output
#1273
dilpath
opened
8 months ago
0
Refactor progress bars
#1272
dweindl
closed
8 months ago
1
Doc: Clear petab notebook output
#1271
dweindl
closed
8 months ago
1
ESSOptimizer: Include results for local searches in OptimizeResult
#1270
dweindl
closed
7 months ago
1
petab: Enable Importer passing verbose to create_model
#1269
Doresic
closed
8 months ago
1
Doc: Update sphinx/rtd config to enable re-executing notebooks
#1268
dweindl
closed
8 months ago
0
Doc: optimizer overview
#1267
dweindl
opened
8 months ago
0
Fix potential TypeError in pypesto.result.optimize.OptimizerResult.summary if x0 is None
#1266
dweindl
closed
8 months ago
1
Fix missing fixed parameters in scatter search results
#1265
dweindl
closed
8 months ago
1
Select: custom minimize method
#1264
dilpath
closed
8 months ago
3
Extended Amici history
#1263
plakrisenko
closed
7 months ago
1
GHA: Fix install_deps.sh
#1262
dweindl
closed
8 months ago
1
GHA: Reduce cache size
#1261
dweindl
closed
8 months ago
2
GHA: Clear PR cache after merge
#1260
dweindl
closed
8 months ago
0
GHA: Set mpl backend
#1259
dweindl
closed
8 months ago
1
Doc: Update SacessOptimizer
#1258
dweindl
closed
8 months ago
1
Customize Ensemble prediction
#1257
shoepfl
closed
8 months ago
3
PEtab.jl makes problems since 2.5.1
#1256
PaulJonasJost
closed
8 months ago
1
Doc: Prettify petab.select docs
#1255
dweindl
closed
8 months ago
1
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