ICB-DCM pyPESTO issues - Githubissues

ICB-DCM / pyPESTO

python Parameter EStimation TOolbox

https://pypesto.readthedocs.io

BSD 3-Clause "New" or "Revised" License

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issues

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dynesty: new method to save only the raw dynesty sample results

#1331 dilpath closed 4 months ago
4
Semiquantitative: fix inner opt tolerance

#1330 Doresic closed 4 months ago
0
AmiciObjective / RelativeAmiciCalculator doesn't always provide `inner_parameters`

#1329 dweindl closed 3 months ago
1
ESSOptimizer: Respect local_n2 in case of failed initial local search

#1328 dweindl closed 4 months ago
1
Hierarchical optimization: fix unnecessary simulation

#1327 dweindl closed 4 months ago
2
Adding Thermodynamic Integration

#1326 arrjon closed 4 months ago
1
Easy switching between likelihood and posterior

#1325 arrjon opened 4 months ago
2
Dynesty warnings added

#1324 arrjon closed 4 months ago
3
Semiquantitative: Repeat change of #1313

#1323 Doresic closed 4 months ago
1
Adaptive Stopping and Continuation of Sampling

#1322 arrjon opened 4 months ago
1
Enable saving custom information with OptimizerResult

#1321 dweindl opened 4 months ago
0
Remove CESSOptimizer

#1320 dweindl closed 4 months ago
1
Fix unwanted amici model recompilation

#1319 m-philipps closed 4 months ago
1
PetabImporter does not check for existing amici models in location specified by output_folder arg.

#1318 m-philipps closed 3 months ago
2
ignore git blame for code reformatting

#1317 PaulJonasJost closed 3 months ago
1
Removed amici DeprecationWarnings

#1316 PaulJonasJost closed 4 months ago
2
Relative: Fix return of relative calculator if sim fails

#1315 Doresic closed 4 months ago
1
Semiquant: Add spline knots to the optimization result

#1314 Doresic closed 4 months ago
2
Semiquant: Fix spline inner parameter initial values

#1313 Doresic closed 4 months ago
0
All CPUs are utilized for `np.linalg.eig/h`, ndim dependent

#1312 dilpath opened 4 months ago
3
Fix CMAES installation hint

#1311 dilpath closed 4 months ago
3
Support ipopt with gradient approximation

#1310 MerktSimon closed 4 months ago
2
Loading result from hierachical optimisation results in `AttributeError`

#1309 arrjon closed 4 months ago
2
Make spline parameters available for user for non-linear semi-quantitative data

#1308 arrjon closed 3 months ago
3
Ruff codechecks

#1307 PaulJonasJost closed 4 months ago
4
Variational inference with PyMC

#1306 arrjon closed 2 months ago
2
Include pymc in the documentation.

#1305 PaulJonasJost closed 5 months ago
1
Code checks not accurately reflects the quality of code

#1304 PaulJonasJost closed 3 months ago
5
Remove flake8-black

#1303 PaulJonasJost closed 5 months ago
1
Black formatting update

#1302 PaulJonasJost closed 5 months ago
0
Decouple PEtab and AMICI

#1301 dilpath opened 5 months ago
1
Black formatting

#1300 PaulJonasJost closed 5 months ago
1
Prepare release v0.4.2

#1299 PaulJonasJost closed 5 months ago
2
Release v0.4.2

#1298 PaulJonasJost closed 5 months ago
1
Semiquantitative: Robust regularization calculation

#1297 Doresic closed 5 months ago
4
pypesto.ensemble.ensemble.EnsemblePrediction.compute_chi2 incorrectly assumes all edatas have equal number of timepoints

#1296 dweindl opened 5 months ago
0
Doc: Update feature overview

#1295 dweindl opened 5 months ago
0
Decouple pypesto.ensemble.ensemble.Ensemble from pypesto.predict.amici_predictor.AmiciPredictor

#1294 dweindl opened 5 months ago
1
EnsemblePrediction: remove "no predictor" warning

#1293 dweindl closed 5 months ago
1
Doc: Update references

#1292 dweindl closed 2 months ago
1
Decouple `AmiciPredictor` from `AmiciObjective`

#1291 dweindl opened 6 months ago
1
Fix time axis in pypesto.visualize.sampling.sampling_prediction_trajectories

#1290 dweindl opened 6 months ago
0
Add dedicated example for ensembles

#1289 dweindl opened 6 months ago
0
Add parameter labels to `pypesto.visualize.ensemble.ensemble_identifiability`

#1288 dweindl opened 6 months ago
0
Select: use petab_select method to set estimated parameters

#1287 dilpath closed 5 months ago
1
doc/example/store.ipynb timeout

#1286 dweindl closed 3 months ago
1
Set only active maintainers as default codeowners

#1285 PaulJonasJost closed 6 months ago
2
Support ipopt with gradient approximation

#1284 MerktSimon closed 3 months ago
0
PetabImporter: version-specific amici model directories

#1283 dweindl closed 6 months ago
1
Problem: add inner problem names, bounds and hierarchical flag

#1282 Doresic closed 6 months ago
2

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