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gEAR
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
https://umgear.org
GNU Affero General Public License v3.0
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SC workbench - ability to download intermediate h5ad files
#646
adkinsrs
opened
3 months ago
0
Index and expression page - highlight region if no dataset collection selected after searching
#645
adkinsrs
closed
2 months ago
2
Compare tool - add DESeq significance testing
#644
adkinsrs
opened
3 months ago
0
Compare tool - add FDR correction for statistical tests
#643
adkinsrs
opened
3 months ago
0
Changing scoring method results in nonsensical values for svgs
#642
JPReceveur
opened
3 months ago
3
gene expression search behavior for missing genes
#641
JPReceveur
opened
3 months ago
0
Exact match behavior when using multigenes
#640
JPReceveur
opened
3 months ago
0
Replace nice-select2 gene search dropdowns with simple autocomplete
#639
adkinsrs
closed
2 months ago
1
Throw warning in dataset explorer when searching with too few characters
#638
JPReceveur
opened
4 months ago
0
Write test suites
#637
adkinsrs
opened
5 months ago
0
Gene Collection Manager - Improve Partial Name matching
#636
adkinsrs
opened
5 months ago
0
Refactor of Single Gene Curator
#635
DanLesperance
closed
5 months ago
4
Visualizing marker genes return an error
#634
beamilon
closed
5 months ago
3
Some uploads failing due to character set
#633
jorvis
closed
5 months ago
3
Setup devel server as a Github Actions self-hosted runner
#632
adkinsrs
closed
5 months ago
1
Dotplot on Multigene Displays Scrunching Dots Together after large amount of genes in display
#631
DanLesperance
opened
6 months ago
1
Adding the ability to make two equal sized datasets in one row of a profile
#630
JPReceveur
opened
6 months ago
1
Test Plan
#629
RLC-DCPPC
opened
6 months ago
3
H5AD file read error shows up as "Resources are busy ..."
#628
jorvis
opened
6 months ago
2
Issue with dataset
#627
gear-portal-team
opened
6 months ago
2
primary analysis - ScRNA-seq - P8, P12, P20 mouse cochlea (Michalski 2023)
#625
gear-portal-team
closed
3 months ago
4
URGENT: gEAR website not loading at all
#624
kmgwilliam
closed
6 months ago
1
Delete dataset display where analysis was deleted.
#623
adkinsrs
opened
6 months ago
0
Rewrite "gene cart manager" (gene lists) page
#622
adkinsrs
closed
5 months ago
9
Update Flask to v3.0.0
#621
adkinsrs
opened
6 months ago
4
Update pandas to v2+
#620
adkinsrs
opened
6 months ago
1
Create utility script to add metadata to columns for Carlo
#619
jorvis
closed
6 months ago
1
add ability to control dot size in static tSNE/MAP scatters
#618
carlocolantuoni
closed
6 months ago
23
download of weighted gene carts writes empty file
#617
carlocolantuoni
closed
5 months ago
3
refactor compare_datasets.js
#616
adkinsrs
closed
2 months ago
5
add ability to flip axes in static tSNE/UMAP display curation
#615
carlocolantuoni
closed
6 months ago
3
Unable to upload the tar file
#614
gear-portal-team
closed
6 months ago
2
Test 2
#613
gear-portal-team
closed
7 months ago
0
Testing if Dan gets auto-assigned
#612
gear-portal-team
closed
7 months ago
1
Reimplement common login system
#611
jorvis
closed
7 months ago
1
Write v2 widget to save genes as gene cart
#610
adkinsrs
closed
6 months ago
2
Error caused by not all parts of primary analysis present in a dataset
#609
JPReceveur
closed
7 months ago
7
Feedback for new dataset curator
#608
clshults
opened
7 months ago
0
Enquiry about downloading data
#607
gear-portal-team
closed
7 months ago
1
nemoarchive_import - Refactor "fetch" functions to "axios" functions
#606
adkinsrs
opened
7 months ago
0
Refactor multigene_curator.js
#605
adkinsrs
closed
7 months ago
1
Create plots where two genes/patterns are X and Y axes
#604
adkinsrs
opened
8 months ago
0
Mr.
#603
gear-portal-team
closed
8 months ago
0
Multigene Display for dotplot not showing updated search when maximized
#602
DanLesperance
opened
8 months ago
1
gene look up by ENSMBL gene ids
#601
carlocolantuoni
opened
8 months ago
1
h5AD files download with unique ID in filename that is not findable via dataset explorer
#600
carlocolantuoni
opened
8 months ago
0
variation on projection page: create view of all patterns projected in 1 dataset displayed on 1 page
#599
carlocolantuoni
opened
8 months ago
5
create a gene cart format that can include many named unweighted gene carts
#598
carlocolantuoni
opened
8 months ago
3
no preivew images found for "most recent datasets" on NeMO Analytics home page
#597
carlocolantuoni
opened
8 months ago
3
make it possible to add/upload new meta data to a dataset after intitial upload.
#596
carlocolantuoni
opened
8 months ago
0
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