Kingsford-Group squid issues

Kingsford-Group / squid

SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data

BSD 3-Clause "New" or "Revised" License

40 stars 22 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Diverging results between STAR and BWA aligned inputs

#33 yasin-uzun opened 1 year ago
0
Segmentation fault (core dumped)

#32 yasin-uzun opened 1 year ago
0
Aborted core dumped error

#31 pcantalupo opened 1 year ago
2
Fix typo in readme

#30 nh13 closed 2 years ago
0
Support for STAR alignment feeding using WithinBAM output

#29 rannick opened 2 years ago
0
SQUID Error - Segmentation fault (core dumped)

#28 think-o opened 2 years ago
0
Error while running SQUID

#27 tamal1307 opened 2 years ago
0
Thread value - squid

#26 think-o opened 2 years ago
0
Can I use squid tool for scRNA-seq data?

#25 levinhein opened 3 years ago
0
Long reads RNA

#24 sunshine-lp0 opened 3 years ago
0
Linker error when compiling SQUID

#23 Lyn16 opened 3 years ago
3
SQUID annotation error

#22 AhmedArslan closed 3 years ago
0
add description of -c and -f options

#21 Gaura closed 3 years ago
0
Example output file?

#20 stianlagstad closed 4 years ago
4
erro in Annotate

#19 liangyuli12138 closed 4 years ago
4
squid errors

#18 jchenpku opened 4 years ago
1
squid running errors

#17 cauyrd opened 5 years ago
2
Annotation of output

#16 matq007 closed 5 years ago
4
Increase sensitivity of SQUID

#15 readmanchiu opened 5 years ago
1
void segmentGraph aborted

#14 srajedwin opened 5 years ago
5
Squid on bacterial genomes

#13 tbarbier closed 5 years ago
5
Bioconda package?

#12 apeltzer opened 6 years ago
3
docker image

#11 FabianGrammes opened 6 years ago
0
Long-read data

#10 OxPen opened 6 years ago
1
Question: removing PCR duplicates

#9 fgvieira opened 6 years ago
1
Question: Does SQUID accept STAR `WithinBAM` output?

#8 fgvieira closed 6 years ago
2
Segmentation fault (core dumped)

#7 timedreamer closed 6 years ago
4
Parameter recommendations for benign tumor types

#6 biobenkj closed 6 years ago
2
Add link to your preprint

#5 mdshw5 closed 6 years ago
1
Segmentation fault: 11

#4 ghost opened 6 years ago
8
Can't find the binary version of SQUID.

#3 YiweiNiu closed 6 years ago
1
Error: munmap_chunk(): invalid pointer: xxxxxx

#2 ycl6 opened 6 years ago
4
Question: Does Squid work on ISO-seq?

#1 zeeev opened 7 years ago
1