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LRGASP
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lrgasp-submissions
Definition and validators for LRGASP submissions
MIT License
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show have a pipeline name as well as submitter name
#48
diekhans
opened
1 year ago
0
reference_transcript_id attribute not validated
#47
diekhans
opened
2 years ago
0
additional challenge 2 submission
#46
mei-du
opened
2 years ago
2
Challenge 3, long_short, Illumina + ONT dRNA submission
#45
andrewprzh
opened
2 years ago
1
Comma-separated column names do not match libraries in experiment.json
#44
andrewprzh
closed
2 years ago
2
lrgasp-synapse-download doesn't handle specifying a single file
#43
diekhans
opened
2 years ago
0
mismatch between data matrix and synapse for simulated data id
#42
diekhans
opened
2 years ago
0
Unspecified parameter in model description
#41
andrewprzh
opened
2 years ago
0
fix simulation tool mixup
#40
andrewprzh
closed
2 years ago
0
conflicting info on simulated data sample identifiers
#39
julienlag
closed
2 years ago
1
simulation software mixup
#38
julienlag
opened
2 years ago
1
creating a team in Synapse is mandatory
#37
julienlag
closed
2 years ago
1
lrgasp-validate-entry looks for non-gz files
#36
julienlag
closed
2 years ago
1
lrgasp-tools ambiguous output
#35
julienlag
opened
2 years ago
1
python virtual environment for submission/validation tools
#34
julienlag
closed
2 years ago
1
unused reads in read-to-model map file format
#33
julienlag
closed
2 years ago
1
Modify entries orgnaization to better match challenges
#32
diekhans
closed
2 years ago
0
Synapse submitssion tools and documentation
#31
diekhans
closed
2 years ago
0
add new Sequel II subread BAMs to the RNA-Seq data matrix
#30
julienlag
closed
3 years ago
2
document required login for synypse
#29
diekhans
closed
2 years ago
1
PB adapters
#28
Lutri22
closed
3 years ago
2
Simulation metadata
#27
andrewprzh
closed
3 years ago
0
minor changes in challenge description
#26
andrewprzh
closed
3 years ago
0
description for simulated data
#25
andrewprzh
closed
3 years ago
0
add aligner and parameters to metadata
#24
diekhans
closed
3 years ago
1
duplicate ids in different genes
#23
diekhans
closed
3 years ago
2
submission with IDs that do not match GTF
#22
diekhans
closed
3 years ago
2
Extra tab in one submitter
#21
diekhans
closed
3 years ago
2
ID column must be called “ID”, not IDs, nor transcript_id ...
#20
diekhans
closed
3 years ago
2
`challenge_id` and `submission_type` metadata attributes should be better described
#19
julienlag
closed
3 years ago
1
valid Python-style identifier
#18
julienlag
closed
4 years ago
1
Gene vs. transcript level expression
#17
fairliereese
opened
4 years ago
2
consistency of transcript_id's in model GTF vs expression matrix
#16
julienlag
closed
3 years ago
1
File format conversion scripts for output from specific tools
#15
fairliereese
opened
4 years ago
1
Do we need a separate JSON for the read to model map?
#14
cindyeliang
closed
3 years ago
2
fix link to submission.json example
#13
andrewprzh
closed
4 years ago
0
The Illumina GM12878 pilot data ENCSR000AEH does not include SIRVs
#12
julienlag
opened
4 years ago
3
read id to model format
#11
fairliereese
closed
3 years ago
4
The challenge_id json property is misspelled
#10
julienlag
closed
4 years ago
1
The submission.json example is 404
#9
julienlag
closed
4 years ago
1
provide flowcell and kit version for ONT datasets
#8
julienlag
opened
4 years ago
1
fixed links to model-format.md
#7
andrewprzh
closed
4 years ago
1
Define process for transfering files, recommend tools.
#6
diekhans
closed
2 years ago
5
Create Mapping_reads2transcript_format.md
#5
FJPardoPalacios
closed
4 years ago
1
Create expression_matrix_format.md
#4
FJPardoPalacios
closed
4 years ago
0
Added file format sections and submission sections
#3
anbrooks
closed
4 years ago
1
added illumina and pacbio fastq links to readme
#2
fairliereese
closed
4 years ago
0
Added table for GM12878 pilot data
#1
anbrooks
closed
4 years ago
0