LTLA scuttle issues - Githubissues

LTLA / scuttle

Clone of the Bioconductor repository for the scuttle package.

https://bioconductor.org/packages/devel/bioc/html/scuttle.html

9 stars 7 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Adding subsets used to SCE

#30 llrs closed 1 week ago
4
Adding subsets from addPerCellQC to rowData

#29 llrs closed 1 week ago
2
discrepancy between addPerCellQC's sum & colSums

#28 HelenaLC closed 1 week ago
2
empty heatmap (aggregateAcrossCells)

#27 Elena983 closed 4 months ago
5
Error in evaluating the argument 'x' in selecting a method for function 'colnames': subscript out of bounds

#26 RunyuXia opened 7 months ago
1
summarizeAssayByGroup output has NULL colnames when ids is a DataFrame

#25 alanocallaghan closed 10 months ago
2
calculateAverage() throw error 'rowMeans' : size factors should be positive

#24 boutrys opened 11 months ago
1
Fix typo in docs

#23 PeteHaitch closed 11 months ago
0
aggregateAcrossCells with `statistics = "median"` produces warnings

#22 nilseling closed 10 months ago
3
Adding alias to exprs_values argument

#21 antagomir closed 1 year ago
3
Factors in subset2index

#20 alanocallaghan closed 1 year ago
3
Add swap_rownames to makePerCellDF

#19 samuel-marsh closed 1 year ago
0
makePerCellDF using alt rowData Column

#18 samuel-marsh closed 1 year ago
4
aggregateAcrossCells() no longer works over multiple assays in SCE

#17 AnnaAMonaco opened 1 year ago
3
How to recover gene expression used for scran::pairwiseTTests()

#16 ewijaya opened 2 years ago
1
No. of discarded cells do not add up?

#15 shaln opened 2 years ago
1
unable to install scuttle

#14 wonliy opened 2 years ago
14
makePerCellTbl

#13 robertamezquita opened 2 years ago
2
logNormCounts - log transformation with different log base?

#12 JPGranizo opened 3 years ago
3
no slot of name "subdata" for this object of class "TENxMatrixSeed"

#11 janinemelsen opened 3 years ago
1
Error with perCellQC related to data set size: "grid elements must have a length <= .Machine$integer.max"

#10 friedue closed 3 years ago
1
Size factors allowed to be zero even when positive=TRUE

#9 alanocallaghan closed 3 years ago
1
Suggestion related to cluster IDs given #7

#8 lcolladotor closed 3 years ago
2
What should the minimum colSums(counts) be for overcoming rescaling = 0 results?

#7 lcolladotor closed 3 years ago
4
Typing out the three QC commands is a pain

#6 LTLA closed 3 years ago
1
Error: object ‘I’ is not exported by 'namespace:S4Vectors'

#5 cytogil closed 3 years ago
3
Failed to find a rowRanges() method for SingleCellExperiment objects

#4 YifeiSheng closed 3 years ago
1
Column names of perCellQCMetrics output vary depending on how use.altexps supplied

#3 PeteHaitch closed 3 years ago
1
Migrate all code to use beachmat v3 with block processing.

#2 LTLA closed 3 years ago
0
[REQ] Support of medians by aggregateAcrossCells()

#1 HelenaLC closed 4 years ago
0