OpenTreeOfLife oti issues

OpenTreeOfLife / oti

indexing service for the OpenTreeOfLife nexson repository

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test_v3_vs_oti_properties.py is failing

#60 jar398 closed 7 years ago
2
test_v3_vs_oti_properties.py is failing

#59 jar398 closed 7 years ago
0
tests now allow field ot:candidateTreeForSynthesis

#58 jar398 closed 7 years ago
0
Fix indexing script

#57 jar398 closed 8 years ago
1
Return Preferred tree status

#56 josephwb closed 8 years ago
2
Return "Preferred" status in `find_trees`

#55 josephwb opened 8 years ago
4
Need a service to turn a list of study ids into a list of DOI + bibliographic information blobs

#54 jar398 opened 8 years ago
0
some new api tests

#53 jar398 closed 8 years ago
0
add missing ws-tests files

#52 jar398 closed 8 years ago
4
remove 'is_deprecated' from list returned by properties method

#51 kcranston opened 8 years ago
0
V3 API

#50 jar398 closed 8 years ago
0
Remove 'is_deprecated' from results

#49 jar398 closed 8 years ago
1
Problem with finding source trees - pg_2859 not found for Microtus californicus

#48 jar398 closed 8 years ago
3
Bug with `/studies/find_trees`?

#47 jar398 closed 8 years ago
1
Add a web service test, and document how to run it

#46 jar398 closed 8 years ago
0
probable oti bug

#45 mtholder opened 8 years ago
2
update pom to java 8

#44 josephwb closed 9 years ago
2
OTI fails to start

#43 jar398 closed 9 years ago
9
Add '@label' property to 'matched_trees' (in singlePropertySearchForTrees response)

#42 jimallman opened 9 years ago
2
find_trees failing

#41 snacktavish opened 9 years ago
15
NexsonParseException when indexing study

#40 jar398 opened 9 years ago
9
fixing bugs with incomplete NexsonNode methods

#39 chinchliff closed 9 years ago
0
Indexing fails

#38 jar398 closed 9 years ago
18
compatibility with jade and ot-base

#37 josephwb closed 9 years ago
0
Quickly return all existing study (and/or tree) tags?

#36 jimallman opened 9 years ago
0
For studies that have multiple tags, oti only captures one

#35 jimallman opened 9 years ago
1
Indexing failures in a few studies

#34 jimallman opened 9 years ago
14
Neo4j download location does not exist

#33 josephwb closed 9 years ago
5
IDs in find_trees web service call

#32 mtholder opened 9 years ago
0
class has disappeared, breaking the index_current_repo.py script

#31 jar398 closed 9 years ago
3
fixing properties

#30 chinchliff closed 10 years ago
1
In v2 we don't seem to be able to search for trees base on include ott IDs.

#29 mtholder closed 10 years ago
2
ot:originalLabel search for tree failing, when (I think) it should not be

#28 mtholder opened 10 years ago
0
remove the is_deprecated property from OTI

#27 chinchliff opened 10 years ago
0
Api v2

#26 chinchliff closed 10 years ago
2
Uninformative error message 'ArrayIndexOutOfBoundsException'

#25 jar398 closed 10 years ago
5
Compatibility update

#24 chinchliff closed 10 years ago
0
possible problem indexing nearly empty studies

#23 mtholder closed 10 years ago
2
If we're going to use maven, we probably need to change version numbers when the code changes

#22 mtholder closed 10 years ago
1
Remove misleading 'using taxonomy' message

#21 jar398 closed 10 years ago
0
index_current_repo.py needs clean interface to phylesystem

#20 jar398 closed 10 years ago
2
args queryrunner.doBasic... not matching the calls to it in the plugins

#19 mtholder closed 10 years ago
18
add service to remove all index entries (but leave any existing taxonomy)

#18 chinchliff closed 10 years ago
2
Add search capability for implied higher taxon mappings

#17 chinchliff closed 10 years ago
2
need to figure out how to report errors from indexNexsons

#16 mtholder closed 10 years ago
2
enabling indexing by focal clade taxon name/ott id

#15 chinchliff closed 10 years ago
0
Upgrade to GPL v3 and add CONTRIBUTORS file

#14 jar398 closed 10 years ago
0
Skips over metadata properties with null value.

#13 mtholder closed 10 years ago
0
Add public method to remove a study, given its ID.

#12 jimallman closed 10 years ago
8
singlePropertySearchForTreeNodes only returns a single node result when there should be many

#11 chinchliff closed 10 years ago
1