PennLINC qsirecon issues

PennLINC / qsirecon

Reconstruction of preprocessed q-space images (dMRI)

https://qsirecon.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

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issues

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Move "scalars_from" field to "input" and "input" to "bundles_from"

#83 tsalo opened 3 months ago
0
Write out model parameters to JSON files at dataset level

#82 tsalo opened 3 months ago
1
Make the model entity have consistent capitalization for model names

#81 mattcieslak closed 3 months ago
2
[DOCS] Add scalar tables

#80 mattcieslak closed 3 months ago
0
Move scalar file configs to YAMLs and use a recon scalar workflow

#79 tsalo closed 3 months ago
3
AMICO config should probably get some sort of different name

#78 mattcieslak closed 3 months ago
1
Add DatasetLinks to dataset_description.json

#77 tsalo closed 3 months ago
1
Fix QSIRecon Entrypoint

#76 smeisler closed 3 months ago
6
QSIRecon entrypoint wrong in container

#75 smeisler closed 3 months ago
0
Non-qsiprep inputs parsed as BIDS

#74 smeisler closed 4 weeks ago
2
Split up connectivity.mat file to follow BEP017

#73 tsalo opened 3 months ago
3
Combine `mfp` and `mdp` entities into single `param` entity

#72 tsalo closed 3 months ago
1
Replace `mfp` and `mdp` entities with `param` entity

#71 tsalo closed 3 months ago
0
Some entities in output files contain prohibited characters

#70 tsalo closed 3 months ago
0
Track immediate `Sources` when possible

#69 tsalo opened 3 months ago
1
Replace `--recon-input-pipeline` with `--input-type`

#68 tsalo closed 3 months ago
1
Replace hyperlinks with BibTeX references

#67 tsalo closed 3 months ago
2
Restructure outputs into BIDS datasets

#66 tsalo closed 3 months ago
2
Add reportlets to document run-wise DWI and anatomical file information

#65 tsalo opened 3 months ago
1
Bump qsirecon_build image version

#64 tsalo closed 3 months ago
1
Remove unused data files

#63 tsalo closed 3 months ago
1
Generalize ingression and normalization to handle T2w data

#62 tsalo opened 3 months ago
3
Add summary reportlets to HTML report

#61 tsalo closed 3 months ago
6
Replace atlas config JSON with BIDS-Atlas datasets

#60 tsalo closed 4 weeks ago
2
[ENH] Start HCP ingress functionality

#59 smeisler closed 2 months ago
11
[WIP / ENH] Add HCP-YA Ingress

#58 smeisler closed 3 months ago
1
[CI] Speed up pyafq test

#57 mattcieslak closed 3 months ago
14
[DOCS] Reorganize documentation

#56 mattcieslak closed 3 months ago
0
Add ng, perng, parng, and mapcoeffs to Dipy MAPMRI outputs

#55 tsalo closed 3 months ago
5
Issues with Dipy MAPMRI Outputs

#54 akimbler closed 3 months ago
11
Write out reports to individual reconstruction derivative folders

#53 tsalo closed 3 months ago
3
Drop Docker wrapper

#52 tsalo closed 3 months ago
1
`test_dipy_mapmri` outputs folders with node name and node qsirecon_suffix

#51 tsalo closed 3 months ago
0
Deployment job is failing

#50 tsalo closed 3 months ago
2
Collect templates from TemplateFlow instead of package data

#49 tsalo closed 3 months ago
4
Drop internal copies of templates in favor of re-orienting TemplateFlow templates

#48 tsalo closed 3 months ago
0
Remove `--longitudinal` parameter

#47 tsalo closed 3 months ago
0
Rename `--recon-input-pipeline` to `--input-type`?

#46 tsalo closed 3 months ago
2
Rename `--freesurfer-input` to `--fs-subjects-dir`

#45 tsalo closed 1 week ago
3
Replace `--output-resolution` and `--infant` with `--output-spaces`

#44 tsalo opened 3 months ago
1
Add a workflow that makes interactive report jsons

#43 mattcieslak opened 3 months ago
0
Maybe add Linden's repo to get controllability measures?

#42 mattcieslak opened 3 months ago
0
Update docs and trigger RTD build

#41 tsalo closed 3 months ago
0
Drop and modify infrastructure files

#40 tsalo closed 3 months ago
0
Drop unused modules, classes, and functions

#11 tsalo closed 3 months ago
2
Replace/modify `_get_iterable_dwi_inputs` with IO spec YAML

#10 tsalo closed 4 days ago
2
Remove preprocessing-specific data files

#9 tsalo closed 3 months ago
0
Remove internal version of LiterateWorkflow

#8 tsalo closed 3 months ago
0
Write out QSIRecon pipeline-wise reports

#7 tsalo closed 3 months ago
2
Remove QSIPrep-specific parameters and Config elements

#6 tsalo closed 3 months ago
0

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