PennLINC qsirecon issues

PennLINC / qsirecon

Reconstruction of preprocessed q-space images (dMRI)

https://qsirecon.readthedocs.io/

BSD 3-Clause "New" or "Revised" License

3 stars 3 forks source link

issues

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Drop internal copies of templates in favor of re-orienting TemplateFlow templates

#48 tsalo closed 2 months ago
0
Remove `--longitudinal` parameter

#47 tsalo closed 2 months ago
0
Rename `--recon-input-pipeline` to `--input-type`?

#46 tsalo closed 2 months ago
2
Rename `--freesurfer-input` to `--fs-subjects-dir`

#45 tsalo opened 2 months ago
3
Replace `--output-resolution` and `--infant` with `--output-spaces`

#44 tsalo opened 2 months ago
1
Add a workflow that makes interactive report jsons

#43 mattcieslak opened 2 months ago
0
Maybe add Linden's repo to get controllability measures?

#42 mattcieslak opened 2 months ago
0
Update docs and trigger RTD build

#41 tsalo closed 2 months ago
0
Drop and modify infrastructure files

#40 tsalo closed 2 months ago
0
Drop unused modules, classes, and functions

#11 tsalo closed 2 months ago
2
Replace/modify `_get_iterable_dwi_inputs` with IO spec YAML

#10 tsalo opened 3 months ago
1
Remove preprocessing-specific data files

#9 tsalo closed 2 months ago
0
Remove internal version of LiterateWorkflow

#8 tsalo closed 2 months ago
0
Write out QSIRecon pipeline-wise reports

#7 tsalo closed 2 months ago
2
Remove QSIPrep-specific parameters and Config elements

#6 tsalo closed 2 months ago
0
Remove QSIPrep-specific tests

#5 tsalo closed 2 months ago
1
Start removing QSIPrep-specific code and documentation

#4 tsalo closed 3 months ago
0
Rename QSIPrep to QSIRecon

#1 tsalo closed 3 months ago
0
AFQ Recon workflow missing "itk_file" error

#18 pierre-nedelec opened 3 months ago
2
network connection required for mrtrix_multishell_msmt_pyafq_tractometry?

#15 DVSneuro opened 4 months ago
1
[BUG] output-resolution shouldn't be mandatory if --recon-input is used

#16 mattcieslak closed 2 months ago
1
[ENH] Add BabyAFQ

#17 mattcieslak opened 4 months ago
11
AtlasPack atlas integration

#12 araikes closed 2 weeks ago
0
Recon reports are broken

#13 araikes closed 2 months ago
2
Convert recon specs from json to yaml

#2 mattcieslak closed 2 months ago
1
Remove unused preprocessing-specific code

#3 tsalo closed 2 months ago
5
Reconstruction dwi outputs not included in derivatives when using a custom atlas

#14 pcamach2 opened 7 months ago
0
Allow `--analysis-level group` by calling `qsiprep_group_report`

#95 tsalo opened 8 months ago
0
pyAFQ within QSIprep does not read --recon_spec json file correctly?

#20 jk619 opened 8 months ago
6
Connectomes from qsiprep 0.13.0RC1 don't seem correct

#19 akelkar26 opened 9 months ago
0
[ENH] Figure out a way to add spatial normalization to the recon workflows

#21 mattcieslak opened 11 months ago
1
pyAFQ_tractometry: Where is the streamlines.json equivalent?

#22 dkp opened 11 months ago
7
Citation tools for reconstruction?

#23 pierre-nedelec opened 1 year ago
1
ODF reports

#24 araikes opened 1 year ago
5
Mrtrix hsvs ACT reconstruction - convert_fs_brain error

#25 Shade- opened 1 year ago
9
"OSError: Duplicate node name" when using "--recon-only"

#26 m-petersen opened 1 year ago
2
Structural connectivity based on individual parcellations

#27 LuRoe7 opened 1 year ago
4
`--bids-filter-file` does not work in QSIRecon (pre-Great Split)

#119 Larmarbar opened 1 year ago
6
calculate network controllability

#28 pinghongyeh opened 1 year ago
1
Baby tractography

#29 arokem opened 1 year ago
5
[ENH] Figure out how to limit resources for DSI Studio recon

#30 mattcieslak opened 1 year ago
0
5ttgen gives error in mrtrix reconstruction

#31 akelkar26 opened 2 years ago
1
pyAFQ error

#32 araikes opened 2 years ago
9
[feature request] SIFT1

#33 smeisler opened 2 years ago
0
Running `recon_only` without doing tck2connectome

#34 dyhan316 opened 2 years ago
3
AMICO sort of failing

#35 araikes opened 2 years ago
3
[ENH] Add RecoBundles/BUAN workflow

#36 mattcieslak opened 2 years ago
0
[DOC] ss3t_csd_beta1 needs better documentation

#37 layerConnectome opened 3 years ago
3
[BUG] Incorrect ODF placement going from DIPY->DSI Studio

#38 mattcieslak opened 3 years ago
0
[BUG] Command not written to recon html report

#39 mattcieslak closed 2 months ago
1

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