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PoonLab
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sierra-local
Retrieve HIVdb algorithm as XML and apply locally to HIV sequences
GNU General Public License v3.0
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AttributeError: 'xml.etree.ElementTree.Element' object has no attribute 'getchildren'
#104
marcbennedbaek
closed
2 weeks ago
4
New release
#103
raquelriyuzo
closed
4 months ago
2
fixed import error from removing subtyper script
#102
WilliamZekaiWang
closed
7 months ago
0
Subtyper module
#101
Kanyerezi30
closed
7 months ago
2
fixes to #99 and deprecating subtyping
#100
WilliamZekaiWang
closed
7 months ago
0
NRTI resistance profile
#99
Kanyerezi30
closed
7 months ago
3
Issue 72 fix for NNN nucleotides
#98
WilliamZekaiWang
closed
8 months ago
0
Iss72
#97
WilliamZekaiWang
closed
9 months ago
0
Unkown subtype
#96
erick-dorlass
closed
8 months ago
6
fixes to isInsertion (issue #91)
#95
WilliamZekaiWang
closed
10 months ago
0
JSON to CSV conversion Error: json2csv.py
#94
gpcr
closed
11 months ago
5
fixes to #92
#93
ArtPoon
closed
11 months ago
0
TypeError: unsupported operand type(s) for -: 'int' and 'NoneType'
#92
aguang
closed
11 months ago
2
Missing T69S_SS (T69ins) mutation
#91
Kanyerezi30
closed
10 months ago
10
DOR resistance level
#90
Kanyerezi30
closed
12 months ago
3
setup.py and postalign
#89
aguang
closed
1 year ago
2
Updating Post-align Dependencies
#88
WilliamZekaiWang
closed
1 year ago
0
postalign vs nucamino
#87
Kanyerezi30
closed
1 year ago
11
Adding subtyping option and fixes to -json
#86
WilliamZekaiWang
closed
1 year ago
4
Subtyping
#85
Kanyerezi30
closed
1 year ago
2
Missing required dependencies: cython==0.29.32, postalign @ https://github.com/hivdb/post-align
#84
Kanyerezi30
closed
1 year ago
8
Adding Postalign as Alignment Program
#83
WilliamZekaiWang
closed
1 year ago
0
Switch to postalign and updating unit tests, resources
#82
ArtPoon
closed
1 year ago
2
Add postalign as a submodule
#81
ArtPoon
closed
1 year ago
0
Test coverage improvement issue for `get_closest_subtype` function of `subtyper.py`
#80
SandeepThokala
closed
1 year ago
3
issue while testing `update_hivdb` function of `updater.py`
#79
SandeepThokala
closed
1 year ago
0
Update dev branch with recent changes
#78
GopiGugan
closed
1 year ago
1
Issue when testing `align_file` method of `NucAminoAligner`
#77
SandeepThokala
closed
1 year ago
1
Issue with `scorerange` parameter of `parse_globalrange` method
#76
SandeepThokala
closed
1 year ago
3
AttributeError, when testing `parse_definitions`, `parse_drugs` and `parse_comments`
#75
SandeepThokala
closed
1 year ago
1
RuntimeError, when testing `HIVdb.set_hivdb_xml` method in ./sierralocal/hivdb.py
#74
SandeepThokala
closed
1 year ago
1
TypeError, when testing `score_single` function in ./sierralocal/score_alg.py
#73
SandeepThokala
closed
1 year ago
1
Fail to run with iupac codes
#72
erick-dorlass
closed
8 months ago
19
Alignment Program
#71
Kanyerezi30
closed
1 year ago
22
list index out of range for hivdb versions 9.3 and 9.4
#70
Kanyerezi30
closed
1 year ago
4
Incorrect NA sequence from nucamino
#69
WilliamZekaiWang
closed
1 year ago
4
Use submodule to retrieve data files
#68
GopiGugan
closed
1 year ago
2
AttributeError: 'xml.etree.ElementTree.Element' object has no attribute 'getchildren'
#67
ArtPoon
closed
1 year ago
8
Failure to update HIVDB and APOBEC DRMS
#66
Kanyerezi30
closed
1 year ago
5
Sierra-local output file does not match with Sierrapy
#65
GopiGugan
closed
1 year ago
18
Problem running updater script
#64
ArtPoon
closed
1 year ago
6
User request: support AAVF or CodFreq input file formats
#63
ArtPoon
opened
3 years ago
1
Write unit test suite
#62
ArtPoon
closed
1 year ago
6
HIVdb algorithm initialization code is in JSONWriter
#61
ArtPoon
opened
5 years ago
0
Distribute ASI2 XML to improve user experience
#60
ArtPoon
closed
5 years ago
0
HIVdb swiched from static to dynamic HTML for DRM ASI2 files
#59
ArtPoon
closed
5 years ago
1
HIVdb assets blocked with 403
#58
ArtPoon
closed
5 years ago
0
sierralocal fails on macOS High Sierra with Python 3.7.4
#57
ArtPoon
closed
5 years ago
1
Stanford HIVdb moved data sets
#56
ArtPoon
closed
5 years ago
0
installation tests
#55
ghost
closed
5 years ago
4
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