RemiAllio MitoFinder issues

RemiAllio / MitoFinder

MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data

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issues

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Cannot add a path to the input fastq

#64 qifasong opened 1 week ago
5
[Seq_ID]_mtDNA_contig.png not created

#63 AkshitaJain2709 closed 1 week ago
6
Issue with Circularization Check for Large Mitogenomes in MitoFinder

#62 meeranhussain opened 1 month ago
1
makeblastdb is not executable

#61 MaykonCris opened 2 months ago
0
Missing gene - blastn evalue rounded to 0.0

#60 crcardenas opened 2 months ago
2
Installation problem related to megahit

#59 hector-romao closed 3 months ago
4
Questions about the circularization check

#58 Nautilus96 opened 3 months ago
1
UCE annotation with Phlyuce

#57 TiagoBelintani opened 5 months ago
0
Where are ImageFont and ImageDraw modules from?

#56 Adamtaranto closed 8 months ago
1
Refactor for Py 3.x

#55 Adamtaranto opened 8 months ago
1
invalid syntax with newest updated mitofinder file

#54 michaeljmetzger opened 8 months ago
4
Could you mind adding new founction at tRNA annotaton?

#53 deyuanyang opened 9 months ago
0
python while running

#52 stachyris closed 9 months ago
3
Varying Lengths and Missing Genes in Outputs

#51 Alexyates103 opened 1 year ago
0
NameError: name 'featureName' is not defined

#50 madhubioinfo opened 1 year ago
3
mitofinder installation

#49 gubrins closed 1 year ago
2
Not finding nucleotide sequence in reference file

#48 teaganme closed 1 year ago
7
MEGAHIT didn't run well - OSError: [Errno 2] No such file or directory: /tmp/k29/29.sdbg.24

#47 mdebiasse opened 1 year ago
3
MitoFinder not installing in mac. Kindly help!

#46 avvypaks opened 1 year ago
5
Not finding the mito in assembled CLR data

#45 aureliendejode opened 1 year ago
3
blast problem on ubuntu 22.04

#44 benoitnabholz closed 1 year ago
5
Missing [Seq_ID]_final_genes_NT.fasta file in final results

#43 pedrogribeiro opened 1 year ago
2
ERROR: MetaSPAdes didn't run well

#42 pedrogribeiro opened 1 year ago
6
subprocess.py

#41 quattrinia opened 1 year ago
6
"gene not recognized"

#40 quattrinia opened 1 year ago
6
cElementTree.ParseError

#39 sihellem closed 1 year ago
5
NCBI submission

#38 xuelingyi opened 2 years ago
0
Problem running the program

#37 luishdez35 closed 2 years ago
7
Evidences of circularization could not be found, but everyother step was successful

#36 eugeniosss opened 2 years ago
5
Java Error

#35 thomlmarshall closed 2 years ago
7
Absolute path to the scaffold file is not accepted (IOError: [Errno 2] No such file or directory)

#34 crcardenas closed 2 years ago
10
Would it work with Wolbachia (or other symbionts) ?

#33 sam217pa opened 2 years ago
6
Problem with creating summary statistics for the mtDNA contig

#32 sallesmath closed 2 years ago
5
Annotating error

#31 luishdez35 closed 2 years ago
3
./install error

#30 hemao-hm closed 2 years ago
6
Installation Problem

#29 qingjiaowohlj closed 2 years ago
3
entrez-direct instructions to fetch mt from ncbi

#28 sam217pa closed 2 years ago
3
git clone is now up to speed with git-lfs clone

#27 sam217pa closed 2 years ago
6
Failure during checking for circularization

#26 nikolasjohnston closed 2 years ago
7
Warning: None of paired reads aligned properly

#25 jbernst closed 3 years ago
9
ncbi-blast-2.12.0+/binmakeblastdb is not executable

#24 jbernst closed 3 years ago
2
Mitochondrial contigs were detected after blast, but no results were written in to <Sample_ID>_mitfi_Final_Results folder

#23 Menglinhsy closed 3 years ago
6
About the output file

#22 Morriyaty closed 3 years ago
22
Unprivileged user installation of dependencies.

#21 roguephysicist closed 3 years ago
2
multi-user / HPC support for MitoFinder

#20 bgruening opened 3 years ago
3
Python 3 support

#19 bgruening opened 3 years ago
10
When run Mitofinder met a problem

#18 kuangzhuoran closed 3 years ago
10
Metaspades has stuck when it is processing reversed reads

#17 Menglinhsy opened 3 years ago
2
Using scafSeq output for Phyluce

#16 nonnohasegawa closed 3 years ago
3
Continue stopped assembly job

#15 chezus666 closed 3 years ago
5