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Rfam
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rfam-production
Rfam production pipeline
Apache License 2.0
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Update microRNA families for release 14.7
#76
AntonPetrov
closed
2 years ago
1
Microrna updates
#75
AntonPetrov
closed
3 years ago
0
Pdb slack update
#74
emmaco
closed
3 years ago
0
Update pdb_mapping.nf
#73
emmaco
closed
3 years ago
0
Pdb mapping
#72
emmaco
closed
3 years ago
0
Add a new tool for replacing accessions in SEED using NCBI BLAST
#71
AntonPetrov
opened
3 years ago
2
Checklist for release 14.7
#70
AntonPetrov
closed
2 years ago
1
Checklist for release 14.6
#69
AntonPetrov
closed
3 years ago
0
Bump django from 1.8.5 to 2.2.24
#68
dependabot[bot]
closed
2 years ago
2
Fix problematic sequence XML dumps
#67
kalvari
opened
3 years ago
0
Expand generate_ftp_files.py to auto-generate all files on ftp
#66
kalvari
opened
3 years ago
0
Regenerate fasta files on FTP
#65
kalvari
opened
3 years ago
0
Create a .gitignore file
#64
kalvari
closed
3 years ago
1
Release 14.4
#63
kalvari
closed
3 years ago
0
Display progress when running auto_commit
#62
kalvari
opened
4 years ago
0
Bump luigi from 2.2.0 to 2.8.0
#61
dependabot[bot]
closed
3 years ago
1
Bump sqlalchemy from 1.0.14 to 1.3.0
#60
dependabot[bot]
closed
4 years ago
0
Metagenomics
#59
kalvari
closed
4 years ago
1
Bump django from 1.8.5 to 1.11.29
#58
dependabot[bot]
closed
3 years ago
1
Bump django from 1.8.5 to 1.11.28
#57
dependabot[bot]
closed
4 years ago
1
Add cmscan parsing functionality in infernal utilities
#56
kalvari
opened
4 years ago
1
Release 14.2
#55
kalvari
closed
4 years ago
0
CWL version of nc_rna_pipeline
#54
mb1069
closed
4 years ago
0
RF00002 5.8s rRNA contains partial matches to 28S and 18S rRNA
#53
adityabandla
closed
3 years ago
2
Add new field in genseq table to reflect genome status
#52
kalvari
opened
5 years ago
0
Potential issue with data indexing
#51
kalvari
opened
5 years ago
0
Run Rfam search with clan competition non-redundant hits
#50
kalvari
opened
5 years ago
0
Incorrect genome ncRNA sequence counts
#49
kalvari
closed
5 years ago
1
Add missing SEED sequences to fasta files?
#48
kalvari
closed
3 years ago
1
Enable seed sequence extraction directly from Rfam.seed
#47
kalvari
closed
4 years ago
1
Fixes pseudoknot count check
#46
kalvari
closed
5 years ago
0
Fix fasta file generation
#45
kalvari
closed
5 years ago
0
Release 14.1
#44
kalvari
closed
5 years ago
0
Hotfix rfam index rel14
#43
kalvari
closed
6 years ago
0
Genomes 13.1
#42
kalvari
closed
6 years ago
0
Put together a pipeline that exports Rfam full_region to RNAcentral .json files
#41
kalvari
closed
1 year ago
0
Remove duplicates from fasta files
#40
kalvari
opened
6 years ago
3
Fix number of indexed sequences
#39
kalvari
closed
5 years ago
0
Add species name to Families for search indexing
#38
AntonPetrov
opened
6 years ago
0
Rfam search fix xrefs
#37
kalvari
closed
6 years ago
0
Fix author entries
#36
kalvari
opened
6 years ago
0
Update author ORCiDs
#35
kalvari
opened
6 years ago
0
Fix motif page RM00023
#34
kalvari
closed
6 years ago
3
Update species and sequence counts on Clan summary pages
#33
kalvari
opened
6 years ago
0
Fix very long viral genomes
#32
kalvari
closed
6 years ago
1
Fix odd genome names
#31
kalvari
closed
6 years ago
1
Resolve all author-orcid duplicates in the database
#30
kalvari
closed
6 years ago
1
Rfam synonyms
#29
AntonPetrov
opened
6 years ago
0
Fix seed sequence indexes
#28
kalvari
closed
3 years ago
0
Precompute rfsearch results to speed up family building
#27
AntonPetrov
closed
7 years ago
1
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