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STOmics
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Stereopy
A toolkit of spatial transcriptomic analysis.
MIT License
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Convert the data from bin100 to cellbin resolution
#307
Yungong1
opened
11 hours ago
0
Error in MSData.find_marker_genes
#306
Zjianglin
opened
5 days ago
4
Problems with data format conversion
#305
ultraypy
opened
6 days ago
5
how to save graphs NOT in interactive mode
#304
BioRB
closed
1 week ago
1
TypeError: 'NoneType' object is not callable
#303
tenlives
opened
1 week ago
1
single R gpu error
#302
solivehong
closed
6 days ago
2
Compatibility with newer Python versions
#301
scseeman
closed
6 days ago
1
Met AttributeError when doing batchqc
#300
Mr-grasscarp
closed
6 days ago
6
Met typeError when following quick start（multi-sample）
#299
Mr-grasscarp
opened
3 weeks ago
7
Include defaults conda channel
#298
aadimator
closed
4 weeks ago
1
Non-repeatable `highly_variable_genes` result
#296
liuxiawei
closed
6 days ago
5
stereopy fiter_cell() 的参数和说明文档让人很费解，希望可以更正一下
#295
vanhzh7909
closed
4 weeks ago
1
Update get_niche method
#294
Melonnaire
closed
1 month ago
0
Work
#293
Melonnaire
closed
1 month ago
0
Can't install v1.3.0
#292
aadimator
closed
4 weeks ago
5
problem with singleR
#291
ultraypy
closed
1 month ago
1
update error when download the requirements for stereopy 1.3.0
#290
Mr-grasscarp
closed
1 month ago
2
Cryptic error message when region passed to read_gef() isn't covered by sample
#289
ViHammer
closed
1 month ago
1
Error in SpatialPlot(object = object, features = features, images = images, : Could not find any spatial image information
#288
MatteoRiva95
closed
1 month ago
4
Met attributeError when doing spatial hotspot
#287
Mr-grasscarp
closed
1 month ago
5
Change the core variable name to num_threads
#286
raozuming
closed
1 month ago
0
New demands for combined transcription and protein analysis
#285
raozuming
closed
1 month ago
0
Update time_series_analysis.py
#284
caolei2-BGI
closed
1 month ago
0
Parameter Update for time_series_analysis.py
#283
caolei2-BGI
closed
1 month ago
0
Different cells attributes between `write_h5ad` and `read_h5ad`
#282
Zjianglin
closed
1 month ago
1
extract expresison matrix from H5MS
#281
BioRB
closed
1 month ago
1
Unit cell area attribute
#280
sgraf2002
closed
1 month ago
1
use SingleR with H5MS or extract raw and normalized data from H5MS #278
#279
BioRB
closed
1 week ago
2
extract raw and normalized data from h5ms
#278
BioRB
closed
2 months ago
0
Subsampling
#277
BioRB
closed
2 months ago
1
Error whe importing a processed Seurat file in Stereopy
#276
agoan27
closed
2 months ago
1
Error when importing h5seurat file on stereopy
#275
agoan27
closed
2 months ago
0
AttributeError when doing Multi-sample batch qc
#274
Mr-grasscarp
closed
2 months ago
5
Notebook problems with version 1.2.0
#273
robin-sto
closed
2 months ago
1
Problem with version 1.1.0
#272
robin-sto
closed
2 months ago
0
How to find down markers? How to distinguish between up and down genes?
#271
Ma-hz
opened
2 months ago
0
write_h5ms lost index
#270
LILI-0000-0002-8173-7367
closed
1 month ago
1
Access to data.key_record
#269
maximelepetit
closed
2 months ago
1
cellbin.gef could not convert to seurat object
#268
leogg738
closed
2 months ago
11
'numpy.ndarray' object has no attribute 'toarray' running SingleR Annotation with cell labels
#267
maximelepetit
closed
2 months ago
1
update documentation
#266
maximelepetit
closed
2 months ago
1
Error: Missing required datasets 'levels' and 'values' with h5ad2rds.R
#265
maximelepetit
closed
2 months ago
3
Format conversion from h5ad to RDS
#264
vladimirkovacevic
closed
2 months ago
1
Stereopy input (cellbin)
#262
maximelepetit
closed
2 months ago
2
When I run "h5ad2rds.R" to convert .h5ad file to .rds format, get error"Error in UpdateKey(key = layer) : could not find function "UpdateKey""
#261
JJJaneeee
closed
2 months ago
1
When input GEM at cell level(Cell bins), there is no dnbCount, cell area and cell border information.
#260
JYWANG-UCAS
closed
2 months ago
2
TypeError: base_scatter() got an unexpected keyword argument 'colors'
#259
MingchenInSZ
closed
3 months ago
1
Table outputs
#257
eisascience
closed
2 months ago
3
Reprocess Mitochondrial %
#256
eisascience
closed
2 months ago
3
Stereopy/docs/source/Tutorials /Format_Conversion.ipynb fails
#255
eisascience
closed
2 months ago
2
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