StadlerlabRice WW-CoV2-project issues

StadlerlabRice / WW-CoV2-project

Plotting qPCR and ddPCR data for WWTPs

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Need to automate the merged `Mxy` numbering to well numbering for `H5N1` analysis

#74 ppreshant opened 3 months ago
0
`EDMI` being removed from reported data

#73 ppreshant closed 8 months ago
2
Need to combine and organize individual pdf plots into a grid.

#72 kmp11 opened 9 months ago
2
Qx 600

#71 kmp11 closed 8 months ago
3
not letting me PULL so i can update the branch

#70 rogit2 closed 3 months ago
6
Missing Positivity Column

#69 stadlerlab opened 1 year ago
1
Creating QX-600 Branch Using New Droplet Volume and 22.1uL Reaction Volume

#68 kmp11 closed 1 year ago
3
Streamlining output : Put NTCs in wwtp output instead of manholes when no other manholes are present

#67 ppreshant opened 1 year ago
1
Correcting calculations for QX600 : for new/smaller droplet volume

#66 ppreshant closed 8 months ago
1
Missing columns in QX600 export

#65 ppreshant closed 1 year ago
20
Need to test new branch `spiking_switch_streamlined` and report back errors

#64 ppreshant opened 2 years ago
1
Speed up loading volumes data from sample registry by innovating matching of the week ID

#63 ppreshant opened 2 years ago
0
Streamline the code down from current 455 lines

#62 ppreshant opened 2 years ago
0
Remove all references to pellet weights in the sheet

#61 ppreshant closed 2 years ago
1
Incorporating variants (5plex, CA-India) into the current pipeline (maintain generality..)

#60 ppreshant closed 2 years ago
0
improve speed of reading csv from googledrive

#59 ppreshant closed 2 years ago
0
Implement a targeted sample longitudinal check across weeks in weekly_plots.R

#58 ppreshant closed 2 years ago
1
Implement a check for missing samples

#57 ppreshant closed 3 years ago
0
Bypass data dump, by using data already in R -: for Camille's mac problem writing sheets

#56 ppreshant closed 3 years ago
0
Missing manhole samples in excel sheet sent to HHD

#55 camillejm89 closed 3 years ago
2
Add a warning and show the data if negative samples have >= 5 droplets -- LOB calculations

#54 ppreshant opened 3 years ago
0
B117_pipeline : Check for sheet in data dump before processing the 1-processing script to avoid doublework

#53 ppreshant closed 3 years ago
1
Bug with changing weeknames for samples (same samples that aren't in the registry?)

#52 ppreshant closed 3 years ago
1
How do reruns replace the older data? -- can we automate this in any way?

#51 ppreshant opened 3 years ago
0
Need to write functions to retrieve data from sheets : for backwards compatibility

#50 ppreshant closed 3 years ago
2
Remove the -Inf in volumes in sample registry user warning if there are no wells with BCoV in the run

#49 ppreshant closed 3 years ago
0
LOQ calculation in terms of copies/ul RNA is too complex. Simplify it to droplets only

#48 ppreshant closed 2 years ago
1
Repeated rows for KW (kingwood central) : similarity to KWW

#47 ppreshant closed 3 years ago
0
Trimming unnecessary features in the code: Baylor, Biobot-ID user input

#46 ppreshant closed 3 years ago
1
Fix pipeline to be generalized in target names

#45 ppreshant opened 3 years ago
1
Bcov dilution

#44 ppreshant closed 3 years ago
0
#42 bayou names

#43 ppreshant closed 3 years ago
0
Bug in positivity calling when copies/L is absent

#42 ppreshant closed 3 years ago
0
get_template_for() returns the wrong well positions (in some cases)

#41 DavidZong closed 3 years ago
2
#36 bayou

#40 DavidZong closed 3 years ago
0
Dynamic detection limit

#39 DavidZong closed 3 years ago
5
Fix sample type to grab sample if it was a grab

#38 DavidZong closed 2 years ago
2
Date Column In Report

#37 DavidZong closed 3 years ago
4
Add functionality to process bayou samples

#36 DavidZong closed 3 years ago
1
Fix column renaming for when there's no BCoV data

#35 DavidZong closed 3 years ago
1
Create a utility that generates a report for manhole samples

#34 DavidZong closed 3 years ago
1
readability and streamlining improvements

#33 ppreshant closed 3 years ago
0
Update LOD for on HHD output

#32 DavidZong closed 3 years ago
2
Use new manhole sheet in Biobot ID google sheet to partition and label manhole samples

#31 DavidZong closed 3 years ago
0
Formula show: BCoV ddPCR error in template volume correction updated

#30 ppreshant closed 4 years ago
0
Minor fixes and adhoc switch

#29 ppreshant closed 4 years ago
0
RAM overload due to too many sheets in google sheet

#28 ppreshant closed 3 years ago
1
Formula show

#27 ppreshant closed 4 years ago
0
Client error: (429) : Quota exceeded limit of 'Read requests per 100 seconds'

#26 ppreshant closed 4 years ago
4
qPCR: QC on standard curve

#25 ppreshant closed 4 years ago
0