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Starlitnightly
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omicverse
A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.
https://starlitnightly.github.io/omicverse/
GNU General Public License v3.0
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DEG plot_volcano KeyError: 'explode'
#53
wanglifangelena
closed
1 month ago
4
Update the function and tutorial of ov.bulk.geneset_plot.
#52
DBinary
closed
5 months ago
0
Could not show the pictures after run the code "ov.utils.embedding" in WSL2
#51
DestinyXuanQAQ
closed
2 months ago
1
update the tutorial of STAligner
#50
DBinary
closed
5 months ago
0
A question about the existence of randomness in OV computed metacells
#49
Doctorluka
closed
5 months ago
6
Some suggestions about OV
#48
lisch7
opened
5 months ago
8
Update the function and tutorial of CEFCON.
#47
DBinary
closed
5 months ago
1
A problem about the TCGA survival analysis
#46
CocoGzh
closed
4 hours ago
1
Actually,not retain only the highest expressed gene
#45
user-tq
closed
4 hours ago
2
scikit-learn module conflicts
#44
lisch7
closed
6 months ago
1
Bulk Analysis about DiffAnalysis using Omicverse
#43
GrazieT
closed
1 month ago
3
Some errors when i pip this package
#42
chulexuexibiedebushihewo
closed
2 months ago
2
defined order for the plot of groups
#41
xflicsu
closed
1 month ago
1
update the tutorial of STAligner
#40
DBinary
closed
6 months ago
0
Inquiry about Preprocessing with Specific Gene Exclusion Based on "Liver tumour immune microenvironment subtypes and neutrophil heterogeneity" Study
#39
lisch7
opened
6 months ago
1
implement other GPU based package to handel large scale cells (>1 million)
#38
xflicsu
closed
1 month ago
1
Exponential Increase in Data Size After Single-cell Data Processing with OV
#37
lisch7
closed
6 months ago
1
update the tutorials of tosica
#36
DBinary
closed
7 months ago
0
update the tutorial of bulk2single
#35
DBinary
closed
7 months ago
0
update the Colab_Reproducibility
#34
DBinary
closed
7 months ago
0
presence of down regulated genes in the pathway analysis with AUCell
#33
khanthanan
closed
4 hours ago
3
To do list in the version of `1.5.2`
#32
Starlitnightly
closed
5 months ago
0
Add SEACells
#31
lp2003
closed
6 months ago
0
Space
#30
JuliaMYQ
closed
5 months ago
0
Create Space
#29
JuliaMYQ
closed
8 months ago
0
ERROR: Could not build wheels for pybedtools, which is required to install pyproject.toml-based projects
#28
lili03080317
closed
8 months ago
0
fix "choose the largest dataset"
#27
mugpeng
closed
8 months ago
1
Code correction
#26
mugpeng
closed
8 months ago
1
TypeError: enrichr() got an unexpected keyword argument 'description'
#24
hslwillion
closed
8 months ago
2
ValueError: cannot reshape array of size 87692 into shape (1993,) in ov.bulk2single.Bulk2Single
#23
Jessica1525809
closed
2 months ago
6
standardized data after batch effects removal by Harmony
#22
faker1c
closed
2 months ago
4
add roe
#21
hai178912522
closed
10 months ago
0
TCGA module survial_init error
#20
libmelo
closed
4 hours ago
1
can't plot the figure
#18
asdChenJin
closed
11 months ago
2
add seacells
#17
hai178912522
closed
11 months ago
0
Can't implicitly convert non-string objects to strings
#16
amaukisumi
closed
2 months ago
2
Pathway analysis with AUCell 'content-length'
#15
qwelongh
closed
1 month ago
4
Single - Tutorial
#14
JuliaMYQ
closed
1 month ago
0
ModuleNotFoundError: No module named 'ov.khan_logger'
#13
DocMonster77
closed
11 months ago
1
Import error
#12
hywang01
closed
11 months ago
0
Update the colab reproducibility of all tutorials.
#10
DBinary
closed
1 year ago
0
KeyError: 'content-length
#9
DocMonster77
closed
1 month ago
4
To do list
#8
DBinary
closed
1 month ago
0
update the pathway_enrichment_plot in gseapy.py
#6
DBinary
closed
1 year ago
0
Update the tutorials of AUCell
#5
DBinary
closed
1 year ago
0
update code reference
#4
Starlitnightly
closed
1 year ago
0
Add the tutorials of AUCell
#3
DBinary
closed
1 year ago
2
To do list
#2
JuliaMYQ
closed
1 year ago
0
Pyomic Change
#1
Starlitnightly
closed
1 year ago
0
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