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SydneyBioX
/
spicyR
https://sydneybiox.github.io/spicyR/
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Updated vignette
#50
shreyarajeshrao
closed
3 weeks ago
0
Feed `...` to pheatmap in `signifPlot`
#49
nick-robo
opened
1 month ago
0
Package header
#48
ellispatrick
opened
1 month ago
0
Check if subject is identical to imageID
#47
ellispatrick
closed
1 month ago
0
Multiple Rs has edge correction problem
#46
ellispatrick
closed
1 month ago
0
cellType and imageID must be factors
#45
ellispatrick
closed
1 month ago
0
Make imageIDCol etc consistent across lisaClust, spicyR and Statial
#44
ellispatrick
opened
2 months ago
1
getPairwise Function Returns Zero-column Matrix
#43
DarioS
closed
1 month ago
1
No coefficient column in my results
#42
edridgedsouza
closed
2 months ago
2
Verbose Parameter is Missing
#41
DarioS
closed
2 months ago
1
Using spicy() on data.frames
#40
sarahsamorodnitsky
closed
2 months ago
2
vignette unclear
#39
SchulzDan
closed
7 months ago
1
signifPlot/topPairs questions/notes
#38
lassedochreden
opened
7 months ago
0
Add `interactive = FALSE` parameter to spicyBoxPlot
#37
alexrunqin
opened
9 months ago
0
Remove SegmentedCells from documentation
#36
ellispatrick
closed
2 months ago
0
fixes issue with cells being a non-factor
#35
nick-robo
closed
10 months ago
0
New error when running `spicy`
#34
nilseling
closed
10 months ago
5
specify number of cores with `nCores` instead of `BPPARAM`
#33
alexrunqin
opened
10 months ago
0
Deprecate `SegemntedCells` from spicyR
#32
nick-robo
closed
2 months ago
0
Unit test for checking spicyTest consistency.
#31
nick-robo
closed
1 month ago
0
Identify images with high attraction/avoidance for certain celltype combinations
#30
StefanosVoglis
closed
10 months ago
2
groups in spicy comparison
#29
SchulzDan
closed
10 months ago
2
`signifPlot` with `fdr = TRUE`
#28
nilseling
closed
10 months ago
3
topPairs signif figures
#27
ellispatrick
closed
10 months ago
2
getPairwise Failure if fast is FALSE
#26
DarioS
closed
10 months ago
1
Deprecation warnings
#25
alboll-lab
closed
10 months ago
1
Updates to allow inputs from Konditional and other distance metrics
#24
fame2827
closed
1 year ago
0
SpicyTest results need to be regenerated in vignette
#23
ellispatrick
closed
1 year ago
0
bump version
#22
nick-robo
closed
1 year ago
0
bump version
#21
nick-robo
closed
1 year ago
0
Move from spatstat.core to spatstat.explore.
#20
rubak
closed
1 year ago
0
Remove segmentedcells from vignette
#19
ellispatrick
closed
1 year ago
0
Survival analysis
#18
ellispatrick
closed
6 days ago
1
Update signifPlot
#17
ellispatrick
closed
1 year ago
0
Add other distance metrics
#16
ellispatrick
closed
10 months ago
0
Note on MacOS Big Sur + conda environment installation
#15
minhtran1309
closed
1 year ago
0
Computed variance-covariance matrix problem: not a positive definite matrix;
#14
ellispatrick
closed
2 years ago
0
subsetting doesn't change length of rownames - Error: subscript is a NSBS object....
#13
ellispatrick
closed
2 years ago
0
points were rejected as lying outside the specified window
#12
ellispatrick
closed
2 years ago
0
Could not find function hutchFun
#11
ellispatrick
closed
2 years ago
0
NAs in LISA
#10
ellispatrick
closed
2 years ago
0
CellTypes as factor
#9
ellispatrick
closed
2 years ago
0
Update spatstat dependency
#8
ellispatrick
closed
2 years ago
0
Testing suite needed
#7
celsomilne
closed
2 years ago
0
Add G function
#6
ellispatrick
closed
1 month ago
2
Multi-column intensities raise an error
#5
celsomilne
closed
2 years ago
1
Difference Between Phenotype and Morphology
#4
celsomilne
closed
2 years ago
1
Multi-Column Morphology
#3
celsomilne
closed
4 years ago
2
Space for annotating cells
#2
ellispatrick
closed
2 years ago
0
Error creating SegmentedCells from tibble
#1
celsomilne
closed
1 year ago
1
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