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SysBioChalmers
/
GECKO
Toolbox for including enzyme constraints on a genome-scale model.
http://sysbiochalmers.github.io/GECKO/
MIT License
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Bug detected in `getSubsetEcModel`
#327
mihai-sysbio
closed
1 year ago
3
docs: add link to tutorials in README
#326
mihai-sysbio
closed
1 year ago
4
feat: parameters format, phylDist.mat file and yeast-GEM.yml
#325
edkerk
closed
1 year ago
1
RAVEN version
#324
Yu-sysbio
closed
1 year ago
5
refactor: applyComplexData
#323
edkerk
closed
1 year ago
1
feat: light_ecModel tutorial getSubsetEcModel
#322
edkerk
closed
1 year ago
6
fix: full_ecModel tutorial ecFVA
#321
edkerk
closed
1 year ago
3
fix: getStandardKcat and applyKcatConstraints
#320
edkerk
closed
1 year ago
1
feat: updates related to tutorials
#319
edkerk
closed
1 year ago
7
feat: online docs
#318
mihai-sysbio
closed
1 year ago
1
online documentation
#317
mihai-sysbio
closed
1 year ago
2
fix: minor bugs identified
#316
ae-tafur
closed
1 year ago
1
Fix: id entry in databases can be duplicated (kegg.tsv and uniprot.tsv)
#315
ae-tafur
closed
12 months ago
1
protocol for ecEcoli, and GECKO light protocol for Human-GEM
#314
edkerk
closed
1 year ago
3
feat: currencyMets and pseudoreactions handling
#313
edkerk
closed
1 year ago
1
feat: a function that creates a the project structure an adapter class
#312
ae-tafur
closed
1 year ago
3
failing tests
#311
mihai-sysbio
closed
1 year ago
3
chore: restructure tutorials
#310
mihai-sysbio
closed
1 year ago
4
fill in ecModel.eccodes from ecModel.ec.eccodes
#309
edkerk
closed
1 year ago
1
restructure tutorials
#308
mihai-sysbio
closed
1 year ago
7
verify Zenodo releases
#307
mihai-sysbio
closed
1 year ago
3
Feat: ignore in tunning kcats user defined proteins
#306
ae-tafur
closed
1 year ago
3
protocol gives non-functional model after step 22.
#305
Champion-GuanWang
closed
1 year ago
11
fix: applyCustomKcats with customKcats structure input
#304
edkerk
closed
1 year ago
3
applyCustomKcats with customKcats structure input
#303
adimadkaikar
closed
1 year ago
1
Bug: Fix compatibility running ecFSEOF with GECKO3 models
#301
ae-tafur
closed
1 year ago
1
bug: refactor ecFSEOF for GECKO3 model format
#300
ae-tafur
closed
1 year ago
0
fix: getStandardKcat with multiple subSystems
#299
edkerk
closed
1 year ago
5
work with multiple models in one MATLAB session
#298
HossFir
closed
1 year ago
1
doc: updateProtPool and flexibilizeProtConcs
#297
edkerk
closed
1 year ago
1
model with proteomics is overconstrained to reach maximum growth rate
#296
ae-tafur
closed
1 year ago
8
fix: minor issues raised
#295
edkerk
closed
1 year ago
1
sensitivityTuning can introduce changes in undesired reactions
#294
ae-tafur
closed
1 year ago
0
GECKO 3.0.2
#293
edkerk
closed
1 year ago
1
fix: error if any match in customKcats
#292
ae-tafur
closed
1 year ago
1
Error in matching the custom Kcats
#291
HossFir
closed
1 year ago
4
Bug detected
#290
HossFir
closed
1 year ago
0
fix: if organism is in KEGG multiple times
#289
edkerk
closed
1 year ago
5
feat: getStandardKcat use custom list of non-enzyme reactions to ignore
#288
edkerk
closed
1 year ago
1
Error in minimizing protein pool usage
#287
Yu-sysbio
closed
1 year ago
3
ec.source in getStandardKcat
#286
Yu-sysbio
closed
1 year ago
2
New feature sensitivityTuning
#285
Yu-sysbio
closed
1 year ago
1
fix: minor enhancements in protocol
#284
edkerk
closed
1 year ago
1
fix: read runDLKcat output
#283
edkerk
closed
1 year ago
1
fix: getECfromDatabase only change ecRxns entries
#282
edkerk
closed
1 year ago
2
Bug detected getECfromDatabase
#281
Yu-sysbio
closed
1 year ago
0
getStandardKcat assigns protein costs to pseudo-reactions
#280
Yu-sysbio
closed
1 year ago
3
Minor enhancement in protocol.m
#279
Yu-sysbio
closed
1 year ago
4
Bug: check if DLKcat.tsv has actually been run through DLKcat
#278
HossFir
closed
1 year ago
1
Bug: Looks for the taxonomically closest organism for matching the Kcats
#277
HossFir
closed
1 year ago
8
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