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Tarskin
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LaCyTools
A high-throughput data extraction package for LC-MS data.
Apache License 2.0
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Textual corrections
#49
524D
closed
1 year ago
0
Read EXTRACTION_PADDING from settings file
#48
524D
closed
1 year ago
0
Unclear which shell to use (for Windows)
#47
magnuspalmblad
opened
2 years ago
2
Dynamic summing
#46
Tarskin
closed
2 years ago
0
Mass accuracy error and self.version adjustment
#45
ahi-ed
opened
2 years ago
4
Datapoints per 1 m/z
#44
GSMKammeijer
closed
2 years ago
2
Mislabeled output "Monoisotopic mass"
#43
DhunShafir
closed
2 years ago
1
Create CODE_OF_CONDUCT.md
#42
Tarskin
closed
5 years ago
0
Python3 intermediate
#41
Tarskin
closed
5 years ago
1
Change 'Monoisotopic' mass in the summary for intact/larger proteins
#40
Tarskin
closed
2 years ago
0
Implement 'Ultra Performance Calibration' and other calibration improvements
#39
Tarskin
opened
6 years ago
0
Program can't function properly if no read/write access
#38
Tarskin
closed
2 years ago
0
Total area normalized data doesn't reach 100%
#37
Tarskin
closed
2 years ago
0
Analytes with identical composition and retention time but differing retention time windows are quantified together
#36
Tarskin
closed
2 years ago
1
Add option to quantify MS/MS fragments
#35
Tarskin
opened
6 years ago
0
Extracting charge from an analyte goes wrong if elements are used (e.g. _H)
#34
Tarskin
closed
6 years ago
1
Background not being determined for intact proteins
#33
Tarskin
closed
6 years ago
1
Prepare LaCyTools for a full binary release
#32
Tarskin
opened
6 years ago
0
Isotopic pattern relative intensities give nonsensical values in the analyte.ref for intact protein fragments ca. 25 kDa
#31
DhunShafir
closed
6 years ago
5
Add different ways of determining the background to LaCyTools
#30
Tarskin
closed
6 years ago
2
Alignment residuals in summary do not align with actual feature
#29
Tarskin
closed
6 years ago
2
Issues using it in negative mode (APTS-labeled glycans)
#28
GSMKammeijer
closed
6 years ago
3
Software kill when in error
#27
abondt
closed
2 years ago
0
Fraction is listed wrong in some cases
#26
Tarskin
closed
6 years ago
3
Mouse IgG glycan compositions were off
#25
Tarskin
closed
7 years ago
1
Cluster normalization would crash upon empty measurements
#24
Tarskin
closed
7 years ago
1
Report the shift in rt in summary
#23
Tarskin
closed
6 years ago
1
Cluster normalization has incorrect alignment of results if a cluster was missing
#22
Tarskin
closed
7 years ago
0
LaCyTools crashes upon looking for a calibrant in an empty region
#21
Tarskin
closed
7 years ago
1
Header stays empty if no measurement contained all clusters
#20
Tarskin
closed
7 years ago
1
LaCyTools uses too much RAM when processing large LC-MS runs
#19
Tarskin
closed
7 years ago
1
Add progress bars
#18
Tarskin
closed
7 years ago
1
Add different normalization methods
#17
Tarskin
opened
7 years ago
0
Normalization per unique rt-rt window cluster
#16
Tarskin
closed
7 years ago
0
Make charge carrier a changable setting
#15
Tarskin
closed
7 years ago
0
The calculated exact mass is off
#14
Tarskin
closed
7 years ago
0
Subsequent calls to "Run Batch Process" crash LacyTools
#13
Tarskin
closed
7 years ago
0
LaCyTools crashes upon looking for a calibrant in background region
#12
Tarskin
closed
7 years ago
0
IPQ calculation bug
#11
Tarskin
closed
8 years ago
0
Spectra duplication in array during reading
#10
Tarskin
closed
8 years ago
0
feature_finder crashes sporadically
#9
Tarskin
closed
8 years ago
0
Isotopic QC bugs
#8
Tarskin
closed
8 years ago
0
optimized and debugged
#7
genadijrazdorov
closed
8 years ago
0
Empty clusters crash the summary creation (due to ZeroDivisionError)
#6
Tarskin
closed
8 years ago
0
Area integration goes wrong for identical composition with different retention times
#5
Tarskin
closed
8 years ago
0
Integrating performance optimization and pyTables support
#4
Tarskin
closed
8 years ago
0
pyTables enhancement #2
#3
genadijrazdorov
closed
8 years ago
0
HD5 Support
#2
Tarskin
closed
2 years ago
6
Noise selection does not interact correctly with LC noise/background determination
#1
Tarskin
closed
8 years ago
0