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TheJacksonLaboratory
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LIRICAL
LIkelihood Ratio Interpretation of Clinical AbnormaLities
https://thejacksonlaboratory.github.io/LIRICAL/stable
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Update .gitignore - ignore *.log files
#511
ielis
closed
4 years ago
0
Develop
#510
pnrobinson
closed
4 years ago
0
Documentation improvements
#509
ielis
closed
4 years ago
0
Tutorial - Disease evaluations
#508
ielis
closed
4 years ago
1
Add missing dependency `protobuf-java-util`.
#507
ielis
closed
4 years ago
0
Make release tag and use it in tutorial
#506
ielis
closed
4 years ago
4
Maven assumed to be installed
#505
ielis
closed
4 years ago
4
Problem with link to VCF in tutorial?
#504
justaddcoffee
closed
4 years ago
2
Some edits to Tutorial
#503
justaddcoffee
closed
4 years ago
2
Develop
#502
pnrobinson
closed
4 years ago
0
adding figures to tutorial
#501
pnrobinson
closed
4 years ago
0
Tutorial:Creating a phenopacket
#500
vidarmehr
closed
4 years ago
1
Tutorial: Running LIRICAL
#499
vidarmehr
closed
4 years ago
4
Tutorial: The data
#498
vidarmehr
closed
4 years ago
1
Tutorial:Set up
#497
vidarmehr
closed
4 years ago
1
Develop
#496
pnrobinson
closed
4 years ago
0
Develop
#495
pnrobinson
closed
4 years ago
0
Prevent outfilePrefix from being set to null
#494
justaddcoffee
closed
4 years ago
1
output file null.html
#493
vidarmehr
closed
4 years ago
3
VCF file is available at /path/to/data/Pfeiffer.vcf
#492
vidarmehr
closed
4 years ago
4
change logger.error() to logger.info()
#491
justaddcoffee
closed
4 years ago
2
logger error
#490
kingmanzhang
closed
4 years ago
2
adding GenotypeLr2Explanation
#489
pnrobinson
closed
4 years ago
0
Genotype Explanation out of synch
#488
pnrobinson
closed
4 years ago
1
[ERROR] Expected a command, got vcf
#487
vidarmehr
closed
4 years ago
5
Corrected malformed phenopackets and erroneous command in docs
#486
justaddcoffee
closed
4 years ago
0
Documentation
#485
vidarmehr
closed
4 years ago
1
I/O Error: Could not load phenopacket
#484
vidarmehr
closed
4 years ago
7
add tool tip to gene diamond
#483
pnrobinson
closed
4 years ago
1
fixing YAML parser test (-m/-t issue)
#482
pnrobinson
closed
4 years ago
0
RC3
#481
pnrobinson
closed
4 years ago
0
template refactor
#480
iimpulse
closed
4 years ago
0
adding checks that -m and -t cannot be used together and that -t \in [0,1]
#479
pnrobinson
closed
4 years ago
0
Cool off reds and greens
#478
justaddcoffee
closed
4 years ago
1
Gene LR in its own column?
#477
pnrobinson
closed
4 years ago
12
Add link to disease page at OMIM to sparkline table.
#476
pnrobinson
closed
4 years ago
1
Limit length of disease names
#475
pnrobinson
closed
4 years ago
1
The order of the bars on the sparkline is reversed
#474
pnrobinson
closed
4 years ago
1
LRs in graphs for each disease are sorted by descending LR, sparkline LRs are not, and diamond icons are missing from sparkline
#473
justaddcoffee
closed
4 years ago
14
Coordinate and tweak colors for likelihood ratios
#472
justaddcoffee
closed
4 years ago
18
-t/--threshold silently ignored
#471
justaddcoffee
closed
4 years ago
6
sparkline too long for non-genotype analysis
#470
pnrobinson
closed
4 years ago
1
Fix placement of excluded phenotypes in liricalHTML
#469
justaddcoffee
closed
4 years ago
0
Mode of inheritance: autosomal dominant. KCNT1: .....
#468
pnrobinson
closed
4 years ago
1
HTML output cleanup
#467
iimpulse
closed
4 years ago
5
Thumbnail
#466
pnrobinson
closed
4 years ago
1
Genotype score LR: Add gene symbol to table
#465
pnrobinson
closed
4 years ago
1
Develop
#464
pnrobinson
closed
4 years ago
0
Develop
#463
pnrobinson
closed
4 years ago
0
--transcriptdb ensembl produces no output
#462
justaddcoffee
closed
4 years ago
3
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