VEuPathDB microbiomeComputations issues

VEuPathDB / microbiomeComputations

1 stars 0 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Computes refactor

#88 d-callan closed 6 months ago
0
Correlation sample metadata error

#87 asizemore opened 6 months ago
0
Correlation: data1 and data2 must have the same number of rows

#86 asizemore closed 6 months ago
1
microbiomeData compatibility

#85 d-callan closed 6 months ago
0
add check for at least two comparator values to diff abund validation

#84 d-callan closed 6 months ago
0
Microbiome: Try to speed up sparcc

#83 d-callan opened 6 months ago
0
Hello Sparcc

#82 d-callan closed 6 months ago
0
How do we setup correlation for handling non-Abundance data?

#81 asizemore closed 7 months ago
8
Diff abund returns pointIDs but no statistics

#80 asizemore closed 6 months ago
5
Correlation error column selected twice

#79 asizemore opened 7 months ago
0
Prefilters

#78 d-callan closed 7 months ago
2
Prune empty samples

#77 d-callan closed 7 months ago
0
Differential abundance: failure with corral data

#76 asizemore closed 7 months ago
3
Fix bug with taxa by metadata correlations w a single metadata var

#75 d-callan closed 8 months ago
0
handle empty metadata slot nicely

#74 d-callan closed 7 months ago
2
Correlation returning NaN??

#73 asizemore closed 8 months ago
5
Correlation error incompatible number of rows

#72 asizemore closed 8 months ago
8
Correlation handle dates

#71 asizemore closed 7 months ago
2
Correlation error in melt.data.table

#70 asizemore closed 7 months ago
2
Correlations: pre-filter features before performing calculation

#69 d-callan closed 7 months ago
2
Mbio: consider line fitting/ model building app

#68 d-callan opened 9 months ago
0
Mbio: consider gsea-type app but for microbial signatures

#67 d-callan opened 9 months ago
0
Diff abund: better support for longitudinal, metabolic data

#66 d-callan opened 9 months ago
0
Beta div failing with pathways

#65 asizemore closed 7 months ago
3
Correlation pvals

#64 d-callan closed 9 months ago
3
Refactor correlations methods to support multiple correlation apps

#62 d-callan closed 9 months ago
2
Add capability for assay v assay

#61 asizemore closed 9 months ago
1
Handle NA in correlation method

#60 d-callan closed 9 months ago
2
Correlations handle missing metadata

#59 asizemore closed 8 months ago
7
Should we change the name of the Result classes?

#58 asizemore opened 10 months ago
1
fix typo

#57 asizemore closed 10 months ago
0
Return string floors

#56 asizemore closed 10 months ago
0
update effect size labels

#55 asizemore closed 10 months ago
0
update toJSON for correlation

#54 asizemore closed 10 months ago
0
add pvalue floor

#53 asizemore closed 10 months ago
4
fix odd output format

#52 d-callan closed 11 months ago
0
Add floor to p value calculations

#51 asizemore closed 10 months ago
0
Testing maaslin2

#50 asizemore closed 11 months ago
1
MBIO: beta div farmm pathway failure

#63 asizemore closed 8 months ago
2
Fix the as.numeric issue in diff abund

#49 asizemore closed 12 months ago
1
force continuous bin starts and ends to be numeric and handle nas

#48 asizemore closed 12 months ago
0
have Comparator class check overlapping bins

#47 asizemore opened 1 year ago
0
Microbiome: move data and metadata validation to abundance data class

#46 asizemore opened 1 year ago
0
Add correlation function

#45 asizemore closed 10 months ago
3
Adding MaAsLin2 to diff abund options

#44 asizemore closed 1 year ago
1
Allow continuous vars in diff abund

#43 asizemore closed 1 year ago
1
differential abundance breaks with pathways and metagenomic abundance data

#42 asizemore closed 10 months ago
1
Differential abundance: allow continuous variables

#41 asizemore closed 1 year ago
0
Expand statistics to include all other metadata

#40 asizemore opened 1 year ago
0
Fix 38 stats results as strings

#39 asizemore closed 1 year ago
1