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VEuPathDB
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microbiomeComputations
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Computes refactor
#88
d-callan
closed
6 months ago
0
Correlation sample metadata error
#87
asizemore
opened
6 months ago
0
Correlation: data1 and data2 must have the same number of rows
#86
asizemore
closed
6 months ago
1
microbiomeData compatibility
#85
d-callan
closed
6 months ago
0
add check for at least two comparator values to diff abund validation
#84
d-callan
closed
6 months ago
0
Microbiome: Try to speed up sparcc
#83
d-callan
opened
6 months ago
0
Hello Sparcc
#82
d-callan
closed
6 months ago
0
How do we setup correlation for handling non-Abundance data?
#81
asizemore
closed
7 months ago
8
Diff abund returns pointIDs but no statistics
#80
asizemore
closed
6 months ago
5
Correlation error column selected twice
#79
asizemore
opened
7 months ago
0
Prefilters
#78
d-callan
closed
7 months ago
2
Prune empty samples
#77
d-callan
closed
7 months ago
0
Differential abundance: failure with corral data
#76
asizemore
closed
7 months ago
3
Fix bug with taxa by metadata correlations w a single metadata var
#75
d-callan
closed
8 months ago
0
handle empty metadata slot nicely
#74
d-callan
closed
7 months ago
2
Correlation returning NaN??
#73
asizemore
closed
8 months ago
5
Correlation error incompatible number of rows
#72
asizemore
closed
8 months ago
8
Correlation handle dates
#71
asizemore
closed
7 months ago
2
Correlation error in melt.data.table
#70
asizemore
closed
7 months ago
2
Correlations: pre-filter features before performing calculation
#69
d-callan
closed
7 months ago
2
Mbio: consider line fitting/ model building app
#68
d-callan
opened
9 months ago
0
Mbio: consider gsea-type app but for microbial signatures
#67
d-callan
opened
9 months ago
0
Diff abund: better support for longitudinal, metabolic data
#66
d-callan
opened
9 months ago
0
Beta div failing with pathways
#65
asizemore
closed
7 months ago
3
Correlation pvals
#64
d-callan
closed
9 months ago
3
Refactor correlations methods to support multiple correlation apps
#62
d-callan
closed
9 months ago
2
Add capability for assay v assay
#61
asizemore
closed
9 months ago
1
Handle NA in correlation method
#60
d-callan
closed
9 months ago
2
Correlations handle missing metadata
#59
asizemore
closed
8 months ago
7
Should we change the name of the Result classes?
#58
asizemore
opened
10 months ago
1
fix typo
#57
asizemore
closed
10 months ago
0
Return string floors
#56
asizemore
closed
10 months ago
0
update effect size labels
#55
asizemore
closed
10 months ago
0
update toJSON for correlation
#54
asizemore
closed
10 months ago
0
add pvalue floor
#53
asizemore
closed
10 months ago
4
fix odd output format
#52
d-callan
closed
11 months ago
0
Add floor to p value calculations
#51
asizemore
closed
10 months ago
0
Testing maaslin2
#50
asizemore
closed
11 months ago
1
MBIO: beta div farmm pathway failure
#63
asizemore
closed
8 months ago
2
Fix the as.numeric issue in diff abund
#49
asizemore
closed
12 months ago
1
force continuous bin starts and ends to be numeric and handle nas
#48
asizemore
closed
12 months ago
0
have Comparator class check overlapping bins
#47
asizemore
opened
1 year ago
0
Microbiome: move data and metadata validation to abundance data class
#46
asizemore
opened
1 year ago
0
Add correlation function
#45
asizemore
closed
10 months ago
3
Adding MaAsLin2 to diff abund options
#44
asizemore
closed
1 year ago
1
Allow continuous vars in diff abund
#43
asizemore
closed
1 year ago
1
differential abundance breaks with pathways and metagenomic abundance data
#42
asizemore
closed
10 months ago
1
Differential abundance: allow continuous variables
#41
asizemore
closed
1 year ago
0
Expand statistics to include all other metadata
#40
asizemore
opened
1 year ago
0
Fix 38 stats results as strings
#39
asizemore
closed
1 year ago
1
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