issues
search
YangLab-um
/
BiologicalOscillations.jl
A package for researchers working with biological oscillations
https://yanglab-um.github.io/BiologicalOscillations.jl/
MIT License
1
stars
2
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add samples and nodes to simulation output
#54
ftavella
closed
2 months ago
0
Add total sample number to simulation output
#53
ftavella
opened
2 months ago
0
Add visualization features to a separate branch
#52
biphy
closed
3 months ago
0
Remove visualization features
#51
biphy
closed
3 months ago
0
Quantification of time scale separation using sojourn time in nullclines
#50
biphy
opened
3 months ago
0
Bifurcation diagram can be created from explicit function but not from `protein_interaction_network`
#49
ftavella
opened
4 months ago
0
Single parameter global sensitivity analysis
#48
ftavella
opened
4 months ago
2
Add deepcopy to hyperparamters when copied
#47
ftavella
closed
4 months ago
0
Deepcopy of default hyperparameters
#46
ftavella
closed
4 months ago
0
Measure timescale separation in time series
#45
ftavella
opened
4 months ago
5
Local sensitivity analysis through random parameter pertubations
#44
ftavella
closed
3 weeks ago
0
Measure the local sensitivity of period and amplitude
#43
ftavella
closed
3 weeks ago
0
Standardize documentation of default_hyperparameters.jl
#42
ftavella
closed
4 months ago
0
Separate mRNA synthesis term as its own reaction
#41
ftavella
closed
4 months ago
0
Replace explicit default values with ones encoded in default_hyperparameters.jl
#40
ftavella
closed
5 months ago
0
Fix bugs related to newer versions of dependencies
#39
biphy
closed
5 months ago
0
Correct definition of a symbol array
#38
biphy
closed
5 months ago
1
Implement a split enzyme network model for topology exploration
#37
ftavella
opened
5 months ago
0
Move to a consistent documentation of hyperparameters
#36
ftavella
closed
4 months ago
0
Update default values on function definitions for PINs and GRNs
#35
ftavella
closed
5 months ago
0
Implement a split enzyme network model based on Kimchi et al. 2020
#34
ftavella
opened
5 months ago
0
Make more clear that mRNA has a synthesis term
#33
ftavella
closed
4 months ago
2
Solve Issue 31 - Random seed and output customization
#32
ftavella
closed
8 months ago
0
Add option to customize what's saved by find_oscillations
#31
ftavella
closed
8 months ago
0
Correct spelling of "LHS"
#30
ftavella
closed
8 months ago
1
Add function to find all cycles and their types in any networks
#29
biphy
closed
9 months ago
0
Data analysis scripts
#28
ftavella
opened
9 months ago
0
Solve Issue #23
#27
ftavella
closed
9 months ago
2
Visualization of connectivity matrix
#26
biphy
closed
9 months ago
2
Add function to find all cycles and their types in any networks
#25
biphy
closed
9 months ago
2
Cross-checking functions to find unique additions
#24
biphy
closed
9 months ago
0
Can't customize run via `find_pin_osicllations` (`find_grn_oscillations`)
#23
ftavella
closed
9 months ago
2
Update network utilities and input handling - New functionality
#22
ftavella
closed
9 months ago
0
Remove unnecessary workflow files
#21
ftavella
closed
10 months ago
0
Refactoring `simulation_times` and `oscillatory_status`
#20
biphy
closed
10 months ago
0
Added simulation times function
#19
biphy
closed
10 months ago
0
CompatHelper: add new compat entry for JLD2 at version 0.4, (keep existing compat)
#18
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for LaTeXStrings at version 1, (keep existing compat)
#17
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for DataFrames at version 1, (keep existing compat)
#16
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for PyPlot at version 2, (keep existing compat)
#15
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for CSV at version 0.10, (keep existing compat)
#14
github-actions[bot]
closed
1 year ago
0
Output size of find_pin_oscillations() is too big
#13
ftavella
closed
1 year ago
1
Result from find_pin_oscillations produces files that are too large
#12
ftavella
closed
1 year ago
2
CompatHelper: add new compat entry for LatinHypercubeSampling at version 1, (keep existing compat)
#11
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Revise at version 3, (keep existing compat)
#10
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Peaks at version 0.4, (keep existing compat)
#9
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for DSP at version 0.7, (keep existing compat)
#8
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for ModelingToolkit at version 8, (keep existing compat)
#7
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Catalyst at version 13, (keep existing compat)
#6
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for DocumenterTools at version 0.1, (keep existing compat)
#5
github-actions[bot]
closed
1 year ago
0
Next