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eCLIP
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Why only read2 is used for peak calling?
#43
FionaMoon
opened
10 months ago
0
why CLIPPER only generates rep1 and rep2?
#42
FionaMoon
opened
10 months ago
2
What‘s the colnames of peakClusters.normed.compressed.bed?
#41
FionaMoon
closed
1 year ago
1
What should I do after peak calling?
#40
FionaMoon
opened
1 year ago
0
Standard paired-end barcodes
#39
MusculusMus
opened
1 year ago
0
Problem for Demultiplexing paired-end reads
#38
FionaMoon
closed
1 year ago
4
Help with demo prerequisite files
#37
valerieT1998
opened
1 year ago
1
Question about Repeat element STAR index
#36
Shashankti
closed
1 year ago
2
barcodecollapsepe.py
#35
juuinn
opened
1 year ago
0
narrowPeak file header
#34
MiqG
closed
1 year ago
1
Which barcode-specific bam are used?
#33
biofilos
opened
2 years ago
1
STAR 2.7.4a and 2.7.6a not compatible with the Genome 20201
#32
Zanex233
opened
2 years ago
0
Fisher exact test should be one sided
#31
algaebrown
opened
2 years ago
0
On AWS instance, cwltool install leads to "error in rdflib-jsonld setup command: use_2to3 is invalid."
#30
lynnhlee
opened
2 years ago
0
umi_tools import fails on single end cwl
#29
bounlu
opened
2 years ago
1
Remove PCR duplicates using barcode_collapse_pe.py or picard?
#28
amdreamer
closed
2 years ago
1
Could you share human Repbase (fasta) with me ?
#27
nikou123456
closed
1 year ago
5
It seems can't run pipeline directly in docker?
#26
tlz4320
closed
3 years ago
3
Error with input normalisation
#25
matthew-valentine
closed
3 years ago
5
error with clipper and scipy version
#24
giardine
closed
3 years ago
15
location of output files
#23
giardine
closed
3 years ago
2
error in Readme
#22
giardine
opened
3 years ago
1
"R1 strand error 83/99" in overlap_peakfi_with_bam_PE.pl
#21
jy427
closed
2 years ago
1
step_calculate_entropy
#20
alexmondaini
closed
3 years ago
8
Singularity image for v0.7.0
#19
bounlu
closed
3 years ago
4
Memory error, barcode collapse 2
#18
pcodyhe
closed
2 years ago
3
makebigwigs step on workflow
#17
alexmondaini
closed
3 years ago
6
step_calculate_entropy
#16
nilesh-iiita
closed
3 years ago
2
STAR rmRep: How to build the Star Index using *.fa files from the RepBase database.
#15
geng-lee
closed
3 years ago
3
How to install eCLIP
#14
geng-lee
closed
4 years ago
1
Workflow error
#13
pcodyhe
closed
3 years ago
6
Docker workflow for unsupported species in clipper
#12
peaceben
closed
4 years ago
6
Could not lead extension Schema
#11
peaceben
closed
4 years ago
2
peak normalizetion vs SMInput
#10
junjunlab
closed
4 years ago
9
Dockerfiles
#9
ealsop
closed
4 years ago
2
Problem in 'Input normalzation'
#8
dahun73
closed
4 years ago
1
switch to https://schema.org/version/latest/schema.rdf
#7
mr-c
closed
3 years ago
0
Is there a version working on hg38 ?
#6
LucoLab
closed
4 years ago
1
why no barcode in input
#5
zhenzhenyang-psu
closed
4 years ago
1
Where is eCLIP.img?
#4
LucasSilvaFerreira
closed
4 years ago
2
eclip/0.4.0 fails due to "umi_tools not found"
#3
shassathe
closed
4 years ago
1
Update README.md
#2
bounlu
closed
3 years ago
1
makebigwigfiles bedtools genomecov error
#1
Enidanellani
closed
5 years ago
3