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abyzovlab
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CNVpytor
a python extension of CNVnator -- a tool for CNV analysis from depth-of-coverage by mapped reads
MIT License
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CRAM input
#190
gevro
closed
1 year ago
1
pytorDG=0 for everything when using pytorCL=combined_mosaic
#189
trjojack
closed
10 months ago
1
CNVpytor for haploid genomes
#188
GiFleres
opened
1 year ago
0
some questions of the output file
#187
ZYongQi
opened
1 year ago
2
multiple normal libraries as input
#186
lmanchon
closed
10 months ago
8
error in viewer.print_calls_file
#185
briankegerreis
closed
1 year ago
2
Cannot export VCF
#184
philippesanio
closed
1 year ago
6
get RD from root file via shell command line
#183
liuhankui
closed
1 year ago
2
Overlapping CNVRs
#182
zainabae
opened
1 year ago
0
CNV for species comparative genomics
#181
VaninaTonzo
opened
1 year ago
0
How to download reference genome resource files manually?
#180
xiekunwhy
closed
1 year ago
3
Fix spelling
#179
archmageirvine
closed
1 month ago
0
Invalid VCF produced by `cnvpytor view`
#178
archmageirvine
closed
1 year ago
1
Error during Manhattan and Circular plot
#177
BiodeB
opened
1 year ago
1
Ms dev
#176
suvakov
closed
1 year ago
0
Ms dev
#175
suvakov
closed
1 year ago
0
cnvpytor.utils - WARNING - Problem with fit: Runtime Error. Using mean and std instead fitting parameters!
#174
kaqisekuzi
opened
1 year ago
4
Problem exporting .vcf file
#173
lunalvan
closed
1 year ago
5
Update VCF output: GT and CN values
#172
arpanda
closed
1 year ago
0
cnvpytor.utils - WARNING - Problem with fit: Runtime Error. Using mean and std instead fitting parameters!
#171
kaqisekuzi
closed
1 year ago
4
What does GT=./1:4.90's genotype mean?
#170
KrithikaSubramanian
opened
1 year ago
0
Filtering and genotyping questions
#169
zainabae
closed
7 months ago
2
CNV Call output empty, lack of RD histogram
#168
shesanIsland
closed
1 year ago
10
Issue with joint caller prototype (ValueError)
#167
lunalvan
closed
1 year ago
1
Can not handle missing genotype in VCF file
#166
whtop
opened
1 year ago
1
Workflow for tumor-normal
#165
Indianhedgehog
closed
1 year ago
1
update vcf code
#164
arpanda
closed
1 year ago
0
everything is empty !!
#163
Indianhedgehog
closed
1 year ago
8
update vcf output code
#162
arpanda
closed
1 year ago
0
joint caller (prototype) error
#161
wushyer
closed
1 year ago
5
chr notation with region plots
#160
mbradyneeley
opened
1 year ago
0
CNV circular map
#159
zainabae
closed
1 year ago
1
Output of print merged_calls (tsv)
#158
shaze
opened
1 year ago
0
CNVpytor not matching CNVnator results
#157
pauline-ng
opened
1 year ago
3
cnvpytor export
#156
forrestzhaosen
opened
1 year ago
0
TypeError printing calls in view mode
#155
manburst
opened
1 year ago
1
Issue with command for generating
#154
saint7007
closed
1 year ago
5
Interpret genotype output
#153
sophie-03
closed
10 months ago
1
Is there a way to get unbinned RD values?
#152
vasqomni
opened
1 year ago
1
Implementation of rd difference of two pytor file
#151
arpanda
closed
1 year ago
0
In filtration, I got error!!
#150
hayeon-pak
opened
1 year ago
3
Filtering by `set p_N` fails silently; using`set pN_range` instead works
#149
ManavalanG
opened
1 year ago
2
Error
#148
sophie-03
closed
1 year ago
0
Fixes `set caller` typo
#147
ManavalanG
closed
1 year ago
0
I have Filtration error
#146
hayeon-pak
opened
1 year ago
0
AttributeError: Can't pickle local object 'Root._read_bam.<locals>.read_chromosome'
#145
vembuprathima
closed
1 month ago
3
Processing Question!
#144
hayeon-pak
opened
1 year ago
0
VCF file format "not working for merged calls"
#143
Talo07
closed
1 year ago
2
Getting the global plot values
#142
vasqomni
closed
1 year ago
1
Problem with pysam?
#141
minn333
closed
1 year ago
4
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