airr-community ogrdb issues

airr-community / ogrdb

Website and associated database for managing submissions of inferred alleles

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New api for ogrdb

#101 yanivm96 closed 4 months ago
0
creating a new ogrdb api, and an UI to make requests

#100 yanivm96 closed 5 months ago
5
Updated flask

#99 yanivm96 closed 5 months ago
0
initial openapi3 spec

#98 schristley closed 6 months ago
3
Bump werkzeug from 2.0.1 to 2.2.3

#97 dependabot[bot] opened 1 year ago
0
Bump certifi from 2021.5.30 to 2022.12.7

#96 dependabot[bot] opened 1 year ago
0
Bump protobuf from 3.17.3 to 3.18.3

#95 dependabot[bot] opened 2 years ago
0
Bump mako from 1.1.4 to 1.2.2

#94 dependabot[bot] closed 1 year ago
1
Bump numpy from 1.21.1 to 1.22.0

#93 dependabot[bot] closed 1 year ago
1
Bump flask-restx from 0.5.0 to 0.5.1

#92 dependabot[bot] closed 3 years ago
1
add airr-standards as a submodule

#91 schristley closed 3 years ago
0
Bump urllib3 from 1.25.7 to 1.26.5

#90 dependabot[bot] closed 3 years ago
1
Bump urllib3 from 1.25.7 to 1.25.8

#89 dependabot[bot] closed 3 years ago
1
Bump pygments from 2.5.2 to 2.7.4

#88 dependabot[bot] closed 3 years ago
1
Bump pyyaml from 5.2 to 5.4

#87 dependabot[bot] closed 3 years ago
1
Bump jinja2 from 2.10.3 to 2.11.3

#86 dependabot[bot] closed 3 years ago
1
Bump httplib2 from 0.15.0 to 0.19.0

#85 dependabot[bot] closed 3 years ago
1
Bump httplib2 from 0.15.0 to 0.18.0

#84 dependabot[bot] closed 3 years ago
1
broken link for Genbank/ENA Workflow

#83 ssnn-airr closed 4 years ago
1
Downloading affirmed sequences not in imgt

#82 williamdlees opened 4 years ago
0
Prevent multiple journal entries for repeated assignation of IMGT name

#81 williamdlees opened 4 years ago
0
Don't report missing nucleotides as differences

#80 williamdlees opened 4 years ago
0
gapping of near identical sequences

#79 williamdlees opened 4 years ago
0
Gapping problems

#78 williamdlees opened 4 years ago
2
Modify ogrdbstats V-gene end analysis to use unmutated sequences only

#77 williamdlees closed 4 years ago
1
Lines in the Sequence notes break in the middle of words

#76 williamdlees closed 4 years ago
1
genotype_statistics reference file checking

#75 williamdlees closed 4 years ago
0
Look at feasibility of adding Rabhit output to ogrdbstats

#74 williamdlees opened 4 years ago
0
Report overall J-allele haplotyping frequencies

#73 williamdlees closed 4 years ago
2
Check submitted sequences against VDJbase novel alleles

#72 williamdlees closed 5 years ago
1
Require gapped sequences in the genotype and produce them from ogrdbstats

#71 williamdlees closed 4 years ago
2
Workflow for unreferenced sequence matches

#70 williamdlees closed 5 years ago
1
Don't flag observations from the same underlying study

#69 williamdlees closed 5 years ago
1
Add 'curated' to welcome title

#68 williamdlees closed 5 years ago
1
Change repo name to ogrdb

#67 williamdlees closed 5 years ago
1
Publish schema in more accessible format

#66 williamdlees closed 5 years ago
3
Don't include orphon genes in statistics

#65 williamdlees closed 5 years ago
2
Make links to ENA and NIH open in a new window

#64 williamdlees closed 5 years ago
1
Fix upload attachment UI

#63 williamdlees closed 5 years ago
1
Support ENA.

#62 williamdlees closed 5 years ago
1
Make V-gapping work with partial sequences

#61 williamdlees closed 4 years ago
1
Submission - Secondary validation of inferred sequence

#60 williamdlees closed 5 years ago
1
Add genomic validation section to sequence

#59 williamdlees closed 5 years ago
0
Rework partis script to use the new airr format

#58 williamdlees closed 5 years ago
1
Flag suspect artefacts in inferences

#57 williamdlees closed 5 years ago
1
Quick way to add IMGT name to a submission

#56 williamdlees closed 5 years ago
0
List IMGT name when listing submissions

#55 williamdlees closed 5 years ago
1
Log submission deletions

#54 williamdlees closed 5 years ago
0
Scan submissions for supporting evidence of already-affirmed sequences

#53 williamdlees closed 5 years ago
1
Option to download only sequences not approved by IMGT

#52 williamdlees closed 5 years ago
1