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bhmm
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legacy-bhmm-force-spectroscopy-manuscript
Bayesian hidden Markov models for analysis of single-molecule trajectory data
GNU Lesser General Public License v3.0
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#49
franknoe
opened
8 years ago
0
no windows binaries available on binstar
#48
marscher
closed
2 years ago
0
added BaseEstimator and mixing.GMM from scikit-learn and removed it as a dependency.
#47
marscher
closed
4 years ago
1
source distribution created via setup.py is broken
#46
marscher
closed
9 years ago
2
Get bhmm ready for pypi (deployment)
#45
marscher
closed
9 years ago
5
Bayesian prior
#44
franknoe
closed
9 years ago
3
Bump in VERSION string in setup.py
#43
jchodera
closed
9 years ago
0
Consider making bhmm core compatible with sklearn
#42
franknoe
opened
9 years ago
9
Fix discrete init
#41
franknoe
closed
9 years ago
2
Refactor BHMM core into separate repo from spectroscopic analysis using BHMMs?
#40
jchodera
opened
9 years ago
22
Reference to reversible T-matrix estimation preprint?
#39
jchodera
opened
9 years ago
1
Discarding initial samples to burn-in
#38
jchodera
opened
9 years ago
4
Issue with stationary / initial distributions
#37
jchodera
closed
9 years ago
5
Updating manuscript with updated examples
#36
jchodera
closed
9 years ago
6
Add automate test for examples to nosetests
#35
jchodera
opened
9 years ago
0
Basic docs skeleton
#34
jchodera
closed
9 years ago
0
Carefully import extra dependencies of the example scripts
#33
franknoe
opened
9 years ago
1
[fixed examples]
#32
franknoe
closed
9 years ago
2
Write sphinx documentation
#31
jchodera
opened
9 years ago
1
Document private methods in api.py
#30
jchodera
opened
9 years ago
0
[WIP] Fix namespace issues in examples
#29
jchodera
closed
9 years ago
1
examples/p5ab-hairpin broken
#28
jchodera
closed
9 years ago
11
examples/plots.py
#27
jchodera
opened
9 years ago
8
examples/discrete_1d_2min
#26
jchodera
opened
9 years ago
0
Discrete HMM initialization occasionally fails
#25
franknoe
opened
9 years ago
0
Discrete HMM initialization currently not available for given P-matrix
#24
franknoe
opened
9 years ago
0
Fix conda recipe
#23
jchodera
closed
9 years ago
19
Fix travis builds of commits and pull requests
#22
jchodera
closed
9 years ago
1
changed all relative imports to absolute imports
#21
franknoe
closed
9 years ago
4
[conda-bld] chdir to install location, since nosetests operates on dirs
#20
marscher
closed
9 years ago
4
Update devtools/conda-recipe for new dependencies
#19
jchodera
opened
9 years ago
1
Relative imports issue
#18
jchodera
opened
9 years ago
8
Api fixes and tests
#17
franknoe
closed
9 years ago
2
Fix discrete convergence problems
#16
franknoe
closed
9 years ago
4
Bugfixes after C implementation merge
#15
jchodera
closed
9 years ago
21
Hmm initialization
#14
franknoe
closed
9 years ago
9
Replace prints by proper logging
#13
franknoe
opened
9 years ago
0
refactor MLHMM / baum_welch
#12
franknoe
closed
9 years ago
3
Add tests for nonuniform observation trajectory lengths
#11
franknoe
opened
9 years ago
0
[WIP] Fixing nosetests and doctests
#10
jchodera
closed
9 years ago
1
Implement integration nosetests for HMM and BHMM
#9
jchodera
opened
9 years ago
0
Addition of C extensions and tests
#8
jchodera
closed
9 years ago
5
Get rid of p_o_i and p_o functions
#7
franknoe
opened
9 years ago
2
Fixed setup.py to install components added by @franknoe
#6
jchodera
closed
9 years ago
3
Fix issue with imports
#5
jchodera
closed
9 years ago
3
Include C code for discrete HMMs
#4
franknoe
closed
9 years ago
1
Implement Poisson output model (for FRET)
#3
franknoe
opened
9 years ago
0
Implement multidimensional Gaussian output model + estimator
#2
franknoe
opened
9 years ago
0
Update reversible transition matrix sampling scheme
#1
jchodera
closed
9 years ago
0