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biocore-ntnu
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epic
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
http://bioepic.readthedocs.io
MIT License
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Arabidopsis thaliana
#94
mtrejo96
opened
3 years ago
2
ChIP-seq WT vs mutants comparison
#93
nermah1
opened
3 years ago
2
Genomes cannot find
#92
tan5251
opened
3 years ago
0
Epic-effective: TypeError: cannot concatenate 'str' and 'NoneType' objects
#91
aboyd003
opened
4 years ago
5
Epic depricated
#90
parida007
opened
5 years ago
1
Stop coveralls from being picked up as a dependency
#89
rmsds
closed
5 years ago
5
How does EPIC work ?
#88
nservant
opened
5 years ago
6
Epic effective for
#87
parida007
opened
5 years ago
11
calculating memory requirements based on bam file size
#86
avilella
opened
6 years ago
7
are read ids necessary in SE mode?
#85
avilella
closed
6 years ago
1
conda still installs 0.2.9
#84
avilella
closed
6 years ago
10
cannot recognize genome
#83
Wangcn81
opened
6 years ago
5
problem with output
#82
lucacozzuto
closed
6 years ago
10
trackline and recommanded parameters
#81
nservant
opened
6 years ago
9
epic and conda
#80
nservant
closed
6 years ago
2
epic-merge throws an error of ValueError: Cannot convert NA to integer
#79
lucacozzuto
closed
6 years ago
3
Best choice parameters
#78
JoseCorCab
opened
6 years ago
1
run epic without control samples
#77
james-chuang
closed
6 years ago
2
salmo salar genome request
#76
etarisal
opened
6 years ago
11
Repair effective_sizes/dm6_50.txt
#75
palmercd
closed
6 years ago
2
epic 0.2.9 compute_score_threshold.py:24 RuntimeWarning: divide by zero encountered in log
#74
grendon
opened
6 years ago
6
No Releases
#73
dslater82
opened
6 years ago
2
Recommend publication
#72
Bohdan-Khomtchouk
opened
6 years ago
1
epicR?
#71
Bohdan-Khomtchouk
opened
6 years ago
5
where "chr1_before_find_islands.csv" file comes from?
#70
zhenyisong
closed
6 years ago
2
Create bigwigs in epic-cluster
#69
endrebak
opened
6 years ago
0
Add C. elegans genome?
#68
teresawlee
opened
6 years ago
3
epic - bed formats
#67
sejmodha
closed
6 years ago
2
epic-merge fails to run
#66
nw11
closed
6 years ago
4
Genome request
#65
sejmodha
closed
6 years ago
4
cat: write error: Broken pipe
#64
romanhaa
closed
6 years ago
7
-w parameter
#63
yeroslaviz
closed
7 years ago
7
Can we run Epic without a control file?
#62
CodeInTheSkies
closed
6 years ago
2
i2bw correction in the doc
#61
yeroslaviz
closed
7 years ago
1
bigwig parameter with epic
#60
yeroslaviz
closed
6 years ago
6
adding saccer3 to the genome list
#59
yeroslaviz
closed
7 years ago
7
total_genome_length is not defined
#58
yeroslaviz
closed
7 years ago
1
OverflowError for paired-end reads bedpe files
#57
yeroslaviz
closed
7 years ago
20
Score & Fold_change? What do they mean and how to caculate them?
#56
zhenyisong
opened
7 years ago
1
Concating dfs pandas error
#55
saycheeeeese
closed
6 years ago
2
custom chromosomes with . in name
#54
saycheeeeese
closed
7 years ago
5
Use unique filenames for --sum-bigwig option
#53
quantumdot
closed
7 years ago
2
Clarify Read Inputs and Differential Peak Calling
#52
quantumdot
opened
7 years ago
1
Effective Genome Size
#51
c-guzman
closed
6 years ago
2
epic-effective cannot find jellyfish
#50
IanCodes
opened
7 years ago
3
Andaconda Update
#49
c-guzman
closed
7 years ago
6
-k FLAG
#48
c-guzman
closed
7 years ago
2
Add type annotations for all functions
#47
DarwinAwardWinner
closed
7 years ago
6
epic - is it usual that analyses take time?
#46
anishdattani
closed
7 years ago
12
bioepic: OverflowError: cannot convert float infinity to integer
#45
anishdattani
opened
7 years ago
4
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