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blachlylab
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mucor
GNU General Public License v3.0
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feature_and_mutation_by_sample
#20
pkhoueiry
opened
7 years ago
1
Add input function for databases
#19
jblachly
opened
7 years ago
0
Exchange HTSeq VCF reader for PyVCF
#18
jblachly
opened
7 years ago
2
Use the ANNfield module for SnpEFF/Annovar ANN= field parsing
#17
jblachly
opened
7 years ago
0
Support cloud/remote service based database id lookup
#16
jblachly
opened
7 years ago
0
Move to python 3
#15
jblachly
opened
7 years ago
1
Refactor
#14
kwkroll32
opened
7 years ago
1
fixes #12 by removing the sparsify argument
#13
kwkroll32
opened
7 years ago
0
Pandas.DataFrame.to_csv() unexpected argument sparsify
#12
kwkroll32
opened
7 years ago
2
FEATURE REQUEST: support for varscan txt output
#11
die4live
opened
7 years ago
3
snpEFF effects should not be re-ordered
#10
jblachly
opened
8 years ago
1
count / freq includes all non-zero depths even if no "ALT" reads
#9
jblachly
opened
8 years ago
0
Galaxy wrapper
#8
jblachly
opened
8 years ago
0
split "variant_details" into respective columns
#7
kwkroll32
opened
8 years ago
1
Rename GenericINFO
#6
jblachly
closed
8 years ago
0
config: example config generator includes relative paths
#5
jblachly
opened
8 years ago
1
config: make directory crawling and filename matching optional
#4
jblachly
closed
8 years ago
0
config: retrieve sample ID from VCF files by default
#3
jblachly
closed
8 years ago
1
config: add flag to pass VCF file names at config time
#2
jblachly
closed
8 years ago
1
BAM files in config should go in files block
#1
jblachly
closed
8 years ago
1