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Spatial-Workshop-SPASAM
Spatially stratified simulation-estimation framework incorporating multistage stock-recruit relationships and incorporating larval IBM outputs
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Final tasks from organizers
#59
brianlangseth-NOAA
closed
1 year ago
1
Add in automation for 100 data sets for spatial model
#58
brianlangseth-NOAA
closed
1 year ago
3
Post meeting spatial model exploration
#57
brianlangseth-NOAA
closed
1 year ago
4
Rec prop is set to 0.25 regardless of the number of areas
#56
brianlangseth-NOAA
closed
1 year ago
1
Setup for movement in final spatial model runs
#55
brianlangseth-NOAA
closed
1 year ago
2
Reporting data for the workshop
#54
brianlangseth-NOAA
closed
1 year ago
1
model exploration runs with normal error for age length key
#53
brianlangseth-NOAA
closed
1 year ago
6
Lack of a plus group showing up in the age data
#52
brianlangseth-NOAA
closed
1 year ago
5
cant build ADMB .exe
#51
brianlangseth-NOAA
closed
1 year ago
2
2 area model improvements
#50
brianlangseth-NOAA
closed
1 year ago
18
Reduce number of areas
#49
brianlangseth-NOAA
closed
1 year ago
1
Version control
#48
brianlangseth-NOAA
closed
1 year ago
5
parameter bound issue(s)
#47
JDeroba
closed
1 year ago
1
Improve on 4 area model
#46
brianlangseth-NOAA
closed
1 year ago
6
Check why 1 area 256 year models aren't reading .dat file correctly.
#43
brianlangseth-NOAA
closed
2 years ago
1
Update OM with EM changes
#42
JDeroba
opened
2 years ago
0
Update YFT_diagnostics for multiple areas
#41
brianlangseth-NOAA
closed
1 year ago
0
Survey mirroring
#40
brianlangseth-NOAA
closed
1 year ago
1
Add the 4 area data sets
#39
brianlangseth-NOAA
closed
2 years ago
11
Add the 100 data sets to the analysis
#38
brianlangseth-NOAA
closed
2 years ago
5
Speed up runtime
#37
brianlangseth-NOAA
closed
2 years ago
3
Include composition plots as bubble plots
#36
brianlangseth-NOAA
closed
2 years ago
0
Set option that if catch is 0 F is set to 0
#35
brianlangseth-NOAA
opened
2 years ago
0
Include years of zero catches in the likelihood?
#34
brianlangseth-NOAA
closed
2 years ago
2
Alternative selectivity shapes
#33
brianlangseth-NOAA
opened
2 years ago
0
Initial abundance issues?
#32
brianlangseth-NOAA
closed
2 years ago
5
Correct entry of observed age comps
#31
brianlangseth-NOAA
closed
2 years ago
4
Correct yield plot in YFT_diagnostics
#30
brianlangseth-NOAA
closed
2 years ago
0
Update bounds and starting conditions
#29
brianlangseth-NOAA
closed
2 years ago
0
tpl updates
#28
brianlangseth-NOAA
closed
2 years ago
0
allow survey selectivity to mirror a fishery
#27
JDeroba
closed
2 years ago
1
Units
#26
JDeroba
closed
2 years ago
1
try a single fleet
#25
JDeroba
closed
2 years ago
4
TO DO: Figure out penalties
#24
brianlangseth-NOAA
closed
2 years ago
2
TO DO: Model scale
#23
brianlangseth-NOAA
closed
2 years ago
3
TO DO: Checking tagging
#22
brianlangseth-NOAA
closed
2 years ago
1
TO DO: Double logistic selectivity parameterization
#21
brianlangseth-NOAA
closed
2 years ago
5
TO DO: Diagnostics
#20
brianlangseth-NOAA
closed
2 years ago
3
Exploration on run time
#19
brianlangseth-NOAA
closed
2 years ago
6
TO DO: Jagged array for new tagging data
#18
brianlangseth-NOAA
closed
2 years ago
2
TO DO SOMETIME: Make SIM_TIM.R compatible with changes
#17
brianlangseth-NOAA
opened
2 years ago
0
true estimates??
#16
brianlangseth-NOAA
closed
2 years ago
1
TO DO: Confirm that new tagging data fixes proportions to have no negative numbers
#15
brianlangseth-NOAA
closed
2 years ago
3
TO DO: Adapt CPUE likelihood to account for non-entries
#14
brianlangseth-NOAA
closed
2 years ago
1
TO DO: Change catch in weight to catch in numbers
#13
brianlangseth-NOAA
closed
2 years ago
1
TAGGING: YFT tagging set up is much less detailed than TIM
#12
brianlangseth-NOAA
closed
2 years ago
0
SURVEY TIMING: I dont understand why dat$surveytiming = 0.5 (as is fleetinfo1 for llcpue) yet CPUE is for season 1. What is the timing?
#11
JDeroba
closed
2 years ago
1
SURVEYS: I could not find survey comps nor survey sample size in the YFT data so I assume they were the same as the catch comps and sample sizes
#10
JDeroba
closed
2 years ago
1
Data munging
#9
brianlangseth-NOAA
closed
2 years ago
0
TO DO: Age length key
#8
brianlangseth-NOAA
closed
2 years ago
9
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