bschiffthaler seidr issues

bschiffthaler / seidr

Toolkit to create crowd networks

GNU General Public License v3.0

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issues

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Why clone in make process？

#47 cfz1998 opened 4 months ago
0
seidr backbone output file issue

#46 gianfilippo opened 2 years ago
0
ARACNE throwing only 0 values

#45 gianfilippo closed 2 years ago
5
--no-scale possibly not working for correlation and pcor

#44 gianfilippo closed 2 years ago
2
Resolve checks only if the index-file exists, not the network

#43 bschiffthaler opened 3 years ago
0
Better bounds checking

#42 bschiffthaler opened 3 years ago
0
Clean up temp files

#40 bschiffthaler opened 3 years ago
0
Describe how a gold standard can be created.

#39 nicolasDelhomme opened 3 years ago
4
Documentation extension

#38 nicolasDelhomme opened 3 years ago
0
Updated generate import script

#37 loalon closed 3 years ago
3
seidr ROC output file closed prematurely

#36 krbe9202 closed 3 years ago
2
Fixed and updated vala nextflow pipeline

#35 loalon closed 3 years ago
0
Improve generate_import_script.py

#34 loalon closed 3 years ago
0
tomsimilarity default sft-cutoff value incorrect

#33 loalon closed 3 years ago
1
tomsimilarity short option '-S' duplicated

#32 loalon closed 3 years ago
0
Print seidr version in log files

#31 sarawestman closed 3 years ago
1
Update R and Python API to new SeidrFiles 0.14

#30 bschiffthaler closed 3 years ago
0
Seidr view --full does not properly display column headers

#29 bschiffthaler closed 4 years ago
0
Documentation improvement

#28 nicolasDelhomme opened 4 years ago
2
narromi, plsnet and mi doesn't generate a network when username contains a dot.

#27 loalon closed 4 years ago
0
MI bin count underflow for small matrices

#26 bschiffthaler closed 4 years ago
0
Removing `--scale,-s` option from seidr and make scaling default

#25 bschiffthaler closed 4 years ago
1
Reversed exemple for the SD in seidr backbone -help

#24 Ayllonbe closed 4 years ago
1
SeidrFileIndex does not skip missing edges.

#23 bschiffthaler closed 4 years ago
1
seidr roc has an incoherent error message

#22 nicolasDelhomme closed 4 years ago
3
Indexing / search for R and Python interface

#21 bschiffthaler opened 4 years ago
0
For seidr roc, set -p default according to the value of -e

#20 nicolasDelhomme closed 4 years ago
1
Seidr ROC prints incorrect number of steps

#19 bschiffthaler closed 4 years ago
1
TBB deprecation of task_scheduler_init

#18 bschiffthaler opened 4 years ago
0
Seidr view does not print supplementary data in some cases

#17 bschiffthaler closed 5 years ago
1
Warn instead of fail when `seidr neighbours` encounters a gene absent from the header

#16 nicolasDelhomme closed 4 years ago
2
seidr neighbours - allow for lower/uppercase mismatch

#15 nicolasDelhomme closed 4 years ago
1
Invalid cross device link

#14 bschiffthaler closed 5 years ago
1
R - seidr_chunked_apply crashes if chunksize larger than number of edges

#13 nicolasDelhomme closed 5 years ago
0
`mi` methods silently fall back to default if `-m` argument is unknown

#12 bschiffthaler closed 5 years ago
0
Incomplete stderr log when running el-ensemble in targeted mode

#11 nicolasDelhomme closed 4 years ago
1
seidr aggregate does not parallelise

#10 nicolasDelhomme closed 4 years ago
2
`seidr stats` crashes due to parameter handling

#9 bschiffthaler closed 5 years ago
2
Double free corruption (probably concurrent access in GLPK) bug in Narromi

#8 bschiffthaler closed 5 years ago
1
Queue file is marked for deletion, but never closed properly so NFS locks.

#7 bschiffthaler closed 5 years ago
2
mi clr produces nan (div by zero)

#6 bschiffthaler closed 5 years ago
0
Algorithms create same queue file

#5 bschiffthaler closed 5 years ago
2
Rework vala.nf with new task scheduler

#4 bschiffthaler closed 3 years ago
2
R API - renaming function parameters and object slots

#3 nicolasDelhomme closed 5 years ago
0
Create conda package for seidr

#2 bschiffthaler closed 4 years ago
0
build with non-standard location of zlib/boost/gsl

#1 orionzhou closed 5 years ago
7