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carpentries-incubator
/
workflows-nextflow
Workflow management with Nextflow and nf-core
https://carpentries-incubator.github.io/workflows-nextflow/
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Add to channels about using `.out`
#52
mahesh-panchal
closed
2 years ago
2
Update 01-getting-started-with-nextflow.md
#51
ggrimes
closed
2 years ago
0
Update 09-Simple_Rna-Seq_pipeline.md
#50
ggrimes
closed
2 years ago
0
Update 06-workflow.md
#49
ggrimes
closed
2 years ago
0
Update 14-nfcore.md
#48
ggrimes
closed
2 years ago
0
Update 13-workflow_checkpoint_caching.md
#47
ggrimes
closed
2 years ago
0
Update 12-reporting.md
#46
ggrimes
closed
2 years ago
0
Coding practices episode
#45
mahesh-panchal
closed
2 years ago
7
Channel broken mental model example.
#44
mahesh-panchal
closed
2 months ago
0
Simple rnaseq pipeline
#43
ggrimes
closed
2 years ago
0
Workflow
#42
ggrimes
closed
2 years ago
0
Replace ansible installation files with training files, and lint.
#41
mahesh-panchal
closed
2 years ago
0
Fixes on episodes 3, 4, 5 and 5 part 2
#40
kerimoff
closed
2 years ago
0
Proof read episode8
#39
mahesh-panchal
closed
2 years ago
5
updates (typo fixes and edits) to epis 1,4,7
#38
kerimoff
closed
2 years ago
3
Nextflow configuration
#37
mahesh-panchal
closed
2 months ago
2
Episode1 suggestions
#36
mahesh-panchal
closed
2 years ago
0
Episode 1 introduces too many new concepts.
#35
mahesh-panchal
closed
2 months ago
0
Episode 1: Key features of wfms is very similar to Nextflow core features.
#34
mahesh-panchal
closed
2 months ago
0
Remove liquid comment
#33
mahesh-panchal
closed
2 years ago
0
Index update
#32
mahesh-panchal
closed
2 years ago
0
Large pull request to get upstream repo up to date with development repo
#31
ggrimes
closed
2 years ago
0
Mental model confusion example for channels.
#30
mahesh-panchal
closed
2 months ago
1
Should we add a Handling and recovering from errors episode?
#29
mahesh-panchal
closed
2 months ago
2
Thoughts on Core vs Supplementary material
#28
mahesh-panchal
closed
2 years ago
3
Channel forking in DSL2 doesn't use 'into' operator
#27
ameynert
closed
3 months ago
0
Alison's changes to episodes 1 & 2
#26
ameynert
closed
2 years ago
0
Multiple outputs in a Process.
#25
ggrimes
closed
3 months ago
1
fix small exercise error in fromFilePairs
#24
ggrimes
closed
3 years ago
0
Channel operator example: Merge vs Join
#23
mahesh-panchal
closed
2 months ago
4
move episode ordering around
#22
ggrimes
closed
3 years ago
0
Bulk update to get back to stable state
#21
ggrimes
closed
3 years ago
0
Incorrect module name?
#20
tomsing1
closed
3 years ago
0
Amend Getting started episode
#19
mahesh-panchal
closed
3 years ago
8
Update front page
#18
mahesh-panchal
closed
3 years ago
0
Channels episode proof read
#17
mahesh-panchal
closed
3 years ago
0
$basedir variable might need to be introduced
#16
tomsing1
closed
3 years ago
1
Filter exercise tries to divide a string by an integer
#15
tomsing1
closed
3 years ago
0
Clarify that directories should be searched recursively?
#14
tomsing1
closed
3 years ago
1
wc.nf script duplicates output lines
#13
tomsing1
closed
3 years ago
1
wc.nf script is missing?
#12
tomsing1
closed
2 years ago
3
bulk updates
#11
ggrimes
closed
3 years ago
1
Episode two proof read, first half
#10
mahesh-panchal
closed
3 years ago
0
Add groovy syntax
#9
mahesh-panchal
closed
3 years ago
0
testing pull
#8
ggrimes
closed
3 years ago
1
Proof reading, and addition of some additional information
#7
mahesh-panchal
closed
3 years ago
1
Add work folder structure and resuming with cached results to key points.
#6
ggrimes
closed
2 years ago
2
Tree command explanation
#5
ggrimes
closed
2 years ago
0
Add Atom editor to setup guide.
#4
ggrimes
closed
2 years ago
1
Change Training Datasets for Nextflow lesson
#3
ggrimes
closed
2 years ago
1
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