issues
search
cdanielmachado
/
carveme
CarveMe: genome-scale metabolic model reconstruction
Other
144
stars
49
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Built my own media library
#155
zoelwl
closed
2 years ago
3
Warning: Gene association for reaction is not DNF
#154
franciscozorrilla
opened
2 years ago
0
The '__init__.py' file is empty
#153
leopoldche
opened
2 years ago
0
inconsistencies and unconserved metabolites in MEMOTE results for carveme models
#152
shumantov
closed
2 years ago
2
documentation on using an open source solver?
#151
nick-youngblut
closed
2 years ago
4
gapfill universe flavor
#150
JosuaCarl
closed
2 years ago
2
GPR not identified in Memote
#149
Sofia-Toro
closed
2 years ago
0
Invalid SBML file
#148
stelmo
closed
8 months ago
10
Issues of output results from riptide
#147
Xingchen-Bian
closed
2 years ago
2
fix: universe extensions in gapfill.py
#146
BenjaSanchez
closed
2 years ago
1
Reconstructing a single model is pending
#145
iuliachiciudean
closed
2 years ago
1
Carveme EggNog mapper error
#144
fcastillo1993
closed
2 years ago
4
CarveMe output interpretation
#143
iuliachiciudean
closed
2 years ago
2
RuntimeError: Solver cplex not available.
#142
iuliachiciudean
closed
2 years ago
1
containerizing CarveMe
#141
zoey-rw
opened
2 years ago
3
error while reconstructing the model using mylibrary
#140
Xingchen-Bian
closed
2 years ago
1
soft constraints inconsistency
#139
rcolpo
closed
2 years ago
2
Adding another protein function annotation tool
#138
PedroMTQ
opened
2 years ago
3
Cynobacteria universe
#137
Buiboni
opened
2 years ago
2
Inconsistencies in chemical formulae
#136
leuschjanphilipp
closed
2 years ago
2
Carveme Error calling stat on file /generated/bigg_proteins.dmnd
#135
jorgeln0
opened
2 years ago
4
"Hard constraints" reactions not present in model
#134
rcolpo
closed
2 years ago
0
Unusually high growth rates in reconstructed models
#133
shreyanshumale
closed
3 years ago
2
CPLEX API of Python
#132
joelmhaske
closed
1 year ago
3
GPR information is missing in output file
#131
Shakra-A
opened
3 years ago
6
Return ensemble to save, and return from carving after saving. Closes…
#130
filrot
closed
3 years ago
0
Problems when building model ensembles in 1.5.0: AttributeError: 'NoneType' object has no attribute 'genes'
#129
filrot
closed
3 years ago
2
--refseq flag fails
#128
franciscozorrilla
closed
3 years ago
1
A question about GramPos/Neg template choose
#127
JY-97
closed
3 years ago
2
Very different reconstructions with CarveMe 1.5
#126
cdanielmachado
closed
3 years ago
3
Low objective_value with the latest Carveme version
#125
juz4karen
closed
3 years ago
7
How to know which reactions have been added for gap-filling?
#124
PolTorrentTornos
closed
3 years ago
1
Reactions missing in bacterial universe after 1.5.0
#123
dotPiano
closed
3 years ago
3
No growth with CarveMe v.1.5.0
#122
lumlukwp
closed
3 years ago
7
carveme 1.5 not finding cplex
#121
vrmarcelino
closed
3 years ago
3
Reactions without GPR in carveme 1.5.0
#120
dotPiano
closed
3 years ago
4
merge development branch
#119
cdanielmachado
closed
3 years ago
0
No console output after running CarveMe
#118
NantiaL
closed
3 years ago
2
Gapfilling error: 'NoneType' object has no attribute 'isSetChemicalFormula'
#117
rodsanpas
closed
3 years ago
6
Building Universal model using Alternative Biomass reactions
#116
jccvila
closed
3 years ago
8
Build metabolic networks from a list of EC number
#115
PandengWang
closed
3 years ago
1
recommended parameter causes error
#114
mmp3
closed
3 years ago
1
carveme and cplex academic version
#113
ghost
closed
3 years ago
10
Gram-positive universe setting produces unknown BiGG identifier
#112
mfeierabend
closed
3 years ago
4
string index out of range error when running carveme in recursive mode
#111
shumantov
closed
3 years ago
3
#ignore
#110
weihua74771
closed
3 years ago
0
Detailed info regarding gapfilling
#109
franciscozorrilla
closed
3 years ago
7
pandas error when scoring
#108
dtmvandenberg
closed
3 years ago
2
Example of how to specify hard constraints?
#107
afvrbanac
closed
3 years ago
3
Conversion of model from sbml-fbc2 (.xml) to R Data Format (RDS)
#106
stefcamp
closed
3 years ago
1
Previous
Next