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cdanielmachado
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carveme
CarveMe: genome-scale metabolic model reconstruction
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Error in build_universe download of BiGG data
#105
Noonanav
closed
3 years ago
1
Update eggnog.py
#104
silvtal
closed
3 years ago
1
Permission issues if admin installed carveme
#103
phantomas1234
opened
3 years ago
1
BiGG ID to EC#
#102
aliyalakhani
closed
3 years ago
1
Non valid SBML produced
#101
smoretti
closed
3 years ago
2
Issue with model reproducibility
#100
shreyanshumale
closed
3 years ago
2
Error when multiprocessing with -r -- AttributeError: Can't pickle local object 'main.<locals>.f'
#99
silvtal
closed
3 years ago
3
update documentation
#98
cdanielmachado
closed
3 years ago
0
Latest development changes
#97
cdanielmachado
closed
3 years ago
0
urllib.error.HTTPError: HTTP Error 404 executing carveme_init
#96
jzaabat
closed
3 years ago
7
Errors after model building (gapfilling & merge_community)
#95
jnesme
closed
3 years ago
4
Development
#94
cdanielmachado
closed
3 years ago
0
Development
#93
cdanielmachado
closed
3 years ago
0
carveme_init: HTTP Error 404: Not Found
#92
silvtal
closed
3 years ago
2
integrate development changes
#91
cdanielmachado
closed
3 years ago
0
TypeError: not a list
#90
SilasK
closed
3 years ago
9
Integrate development branch
#89
cdanielmachado
closed
3 years ago
0
carveme_init error
#88
zhangzn19
closed
3 years ago
3
Solver 'cplex' not available
#87
juz4karen
closed
3 years ago
11
"No module named 'future'"
#86
Dfraccas
closed
3 years ago
2
SteadyCom on CarveMe models
#85
arianccbasile
closed
3 years ago
2
Models created with CarveME fail in molecular weight of biomass products standardization
#84
arianccbasile
closed
4 years ago
2
File conversion
#83
Sububioinfo
closed
4 years ago
1
glpk solver support
#82
mmp3
closed
4 years ago
1
Versioning issues
#81
cdanielmachado
closed
3 years ago
6
cplex binding throws error TypeError: not a list
#80
mmp3
closed
4 years ago
2
Issue in Carveme
#79
Sububioinfo
closed
4 years ago
1
Error in running build_kegg_reactions
#78
yut8920
closed
4 years ago
2
the use of thermodynamics.py file
#77
yut8920
closed
4 years ago
1
Initializing in customized medium composition
#76
stellareichling
closed
4 years ago
1
#alternative-universes
#75
LeilaRze
closed
4 years ago
4
InitCarveme error
#74
juz4karen
closed
4 years ago
11
Organism Specific Biomass equation
#73
SPD20
closed
3 years ago
1
create_gpr_table SyntaxError: invalid syntax
#72
MarieBurel
closed
4 years ago
2
SyntaxError: invalid syntax
#71
SPD20
closed
4 years ago
2
MILP solver failed: integer infeasible
#70
bcoltman
closed
4 years ago
3
NameError: name 'KeggModel' is not defined
#69
MarieBurel
closed
4 years ago
6
init fails to dowload refseq
#68
lcottret
closed
4 years ago
2
multiprocessing.pool.MaybeEncodingError
#67
pbelmann
closed
3 years ago
6
Model content not reflective of diamond results
#66
JaredTBrod
closed
4 years ago
7
GPR rule and COBRATOOLBOX
#65
SPD20
closed
4 years ago
4
Ensemble modelling with own media composition?
#64
bilehtin
closed
4 years ago
3
Failed to run diamond
#63
egreen18
closed
4 years ago
13
ValueError: Wrong number of items passed 2, placement implies 1
#62
rafafernandes96
closed
3 years ago
8
TypeError: not a list
#61
SPD20
closed
4 years ago
9
TypeError: not a list, when run carve
#60
PandengWang
closed
4 years ago
4
Parallelization
#59
tonyjhlam
closed
4 years ago
1
"Searching alignments... Failed to run diamond." then (from diamond)"Searching alignments... Illegal instruction: 4"
#58
jbholm
closed
3 years ago
6
[FIX] changed default solver from CPLEX to GUROBI
#57
famosab
closed
3 years ago
2
[FIX] changed default solver from CPLEX to GUROBI
#56
famosab
closed
4 years ago
0
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