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cdanielmachado
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carveme
CarveMe: genome-scale metabolic model reconstruction
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CPLEX Optimizer is not available for free for academia
#55
famosab
closed
3 years ago
6
Gapfill fails to load sbml: VMH models
#54
arvindjs
closed
5 years ago
2
Eukaryotic model
#53
yunha
closed
5 years ago
5
Incorrect filepaths in carveme_init
#52
aruginkgo
closed
5 years ago
2
integrate development branch
#51
cdanielmachado
closed
5 years ago
0
Alternative universe curation
#50
fairquestion
closed
5 years ago
1
Mysterious warnings/error when carving some genomes
#49
franciscozorrilla
closed
5 years ago
14
Problem size limits exceeded with free edition of CPLEX
#48
lavik17
closed
5 years ago
4
Failed to run diamond
#47
lavik17
closed
5 years ago
2
getting carveme to run
#46
lavik17
closed
5 years ago
2
ImportError: No module named _tkinter
#45
lavik17
closed
5 years ago
1
Is carveme able to reconstruct genome scale models for fungies?
#44
amirfeizi
closed
5 years ago
3
failed in installing carveme
#43
darwinbandoy
closed
5 years ago
1
Get an error with merge_community
#42
AlexandrePelletier
closed
3 years ago
3
carveme archaea models
#41
arianccbasile
closed
5 years ago
3
Problems installing cplex for carveme
#40
arianccbasile
closed
5 years ago
3
FBA on Community Models VS Individual Model
#39
rdmtinez
closed
5 years ago
2
--init M9 yields no output SOMETIMES
#38
rdmtinez
closed
5 years ago
4
--split-pool (not an issue, just a question)
#37
rdmtinez
closed
5 years ago
1
Is carve me avaiable for de novo assembled contigs from metagenomic data?
#36
coralzhang
closed
5 years ago
1
carveme_init not found
#35
fairquestion
closed
5 years ago
5
Running CarveMe on HPC cluster
#34
rdmtinez
closed
5 years ago
2
observed issues with omission of '--dna ,-o' option in command
#33
rdmtinez
closed
5 years ago
5
Get pathways/subsystems
#32
lcottret
closed
3 years ago
3
No header in the tsv file produced by carve
#31
lcottret
closed
5 years ago
1
Issue installing cplex
#30
franciscozorrilla
closed
5 years ago
6
CarveME models cannot be validated
#29
thh32
closed
5 years ago
1
SyntaxError: unqualified exec is not allowed in function 'get_ode'
#28
thh32
closed
5 years ago
1
EnvironmentError: Solver 'cplex' not available
#27
MARS2280
closed
5 years ago
1
Convert BiGG to EC numbers
#26
acenieuw
closed
6 years ago
1
Choose Gurobi instead of Cplex
#25
pbaCamille
closed
6 years ago
1
windows executables
#24
cdanielmachado
closed
3 years ago
0
Database was built with a different version of Diamond
#23
lcottret
closed
6 years ago
13
Cut-off to choose the homology template using DIAMOND
#22
hongzhonglu
closed
6 years ago
5
update BiGG version and keep synchronized with eggnog-mapper
#21
cdanielmachado
closed
3 years ago
6
Construction universal model CM
#20
acenieuw
closed
6 years ago
3
merge py3 with master
#19
cdanielmachado
closed
6 years ago
0
merge development branch
#18
cdanielmachado
closed
6 years ago
0
retreiving genbank file of universal model
#17
acenieuw
closed
6 years ago
4
error while running on custom media
#16
nbutyrate
closed
6 years ago
3
Annotations in the notes
#15
silviamorins
closed
5 years ago
3
EnvironmentError: Solver 'cplex' not available.
#14
silviamorins
closed
6 years ago
19
fixed typo
#13
matthiaskoenig
closed
6 years ago
0
merge_community function producing error
#12
nbutyrate
closed
6 years ago
3
Archaea
#11
cdanielmachado
closed
6 years ago
0
Experimental constraints
#10
cdanielmachado
closed
6 years ago
0
Bioconda recipe
#9
SilasK
closed
3 years ago
7
Gapfilling does not flag bogus media compounds
#8
chadsmith123
closed
3 years ago
0
Debug features
#7
cdanielmachado
closed
6 years ago
0
warning about the charge number of metabolites
#6
jmcamza
closed
6 years ago
1
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