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cgat-developers
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cgat-apps
cgat-apps repository
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Error in cgat fasta2bed
#78
biozzq
closed
3 years ago
2
removed Bio.Alphabet
#77
Acribbs
closed
3 years ago
0
gtf2gtf --help error
#76
IanSudbery
closed
3 years ago
3
PeakShapeResult has no attribute `hist`
#75
IanSudbery
opened
3 years ago
1
Error when installing CGAT
#74
Rozita1
closed
3 years ago
2
gtf2gtf to filter duplicate CDS and exon
#73
Just08
closed
3 years ago
1
fix to pick up longest transcript
#72
Acribbs
closed
3 years ago
1
Problem while trying to filter gtf file by longest transcript
#71
eduardopdev
opened
4 years ago
3
Revert "try test for pysam0.15.4"
#70
Acribbs
closed
4 years ago
0
try test for pysam0.15.4
#69
Acribbs
closed
4 years ago
0
{is} bam2geneprofile bigwig
#68
IanSudbery
closed
4 years ago
5
bam2geneprofile - intervals at the edge of contigs
#67
IanSudbery
closed
4 years ago
3
updated miniconda install
#66
Acribbs
closed
4 years ago
0
Deal with empty MEME files in MEME.py
#65
IanSudbery
closed
4 years ago
5
{is} sra urllib encoding
#64
IanSudbery
closed
4 years ago
1
module 'cgatcore.experiment' has no attribute 'ArgumentParser'
#63
IanSudbery
closed
4 years ago
4
pysam-0.15.4 does not cgat-apps tests
#62
sebastian-luna-valero
closed
3 years ago
4
removed ix from_items depricated pandas
#61
Acribbs
closed
4 years ago
0
pandas 1.0
#60
sebastian-luna-valero
closed
4 years ago
6
Jp bcl2fastq
#59
Acribbs
closed
4 years ago
0
bumped version number
#58
Acribbs
closed
4 years ago
0
from_item depricated have replaced with from_dict
#57
Acribbs
closed
4 years ago
0
travis tests are failing and it seems on local testing on mac that ch…
#56
Acribbs
closed
4 years ago
5
Added bcl2fastq.py
#55
Acribbs
closed
4 years ago
2
Understanding `min_kmer_matches` in `fastqtools.filter_by_sequence`
#54
paulbrodersen
opened
4 years ago
0
Fix ArgParser compatibility code error
#53
jscaber
closed
4 years ago
2
Argparser compatibility code error
#52
jscaber
closed
4 years ago
1
updated bam_pileup to reflect changes in argparser
#51
Acribbs
closed
4 years ago
0
bug fix due to change in argument parser
#50
Acribbs
closed
4 years ago
0
Ac itererror
#49
Acribbs
closed
4 years ago
0
Ac argparse
#48
Acribbs
closed
4 years ago
0
Fix #46
#47
sebastian-luna-valero
closed
4 years ago
3
cannot install cgat-apps as a CGAT developer
#46
kevinrue
closed
4 years ago
0
added fix for bigwig generation - still need to test though
#45
Acribbs
closed
4 years ago
0
Ah fix conda issues
#44
AndreasHeger
closed
5 years ago
0
ImportError: /lib/python3.6/site-packages/cgat/BamTools/bamtools.cpython-36m-x86_64-linux-gnu.so: undefined symbol: bam_read1
#43
sebastian-luna-valero
closed
4 years ago
32
missing sortedcontainers module
#42
Acribbs
closed
5 years ago
2
RuntimeError: generator raised StopIteration
#41
sebastian-luna-valero
closed
4 years ago
3
New release
#40
Acribbs
closed
5 years ago
6
pip install cgat does not install dependencies
#39
j-berg
closed
5 years ago
11
Ac geneprofile
#38
Acribbs
closed
5 years ago
0
KeyError: 'ID' on gff32gtf utility
#37
sandbardev
closed
5 years ago
4
Bigwig files in bam2geneprofile
#36
idyonchev
closed
4 years ago
6
Change conda channels for installation
#35
sebastian-luna-valero
closed
5 years ago
0
Ac bam2geneprofile
#34
Acribbs
closed
5 years ago
0
Tests failing
#33
sebastian-luna-valero
closed
5 years ago
13
Exception: Problem running command: conda info --json
#32
sandbardev
closed
5 years ago
6
Have removed all R dependancies
#31
Acribbs
closed
5 years ago
0
bam2bam and log redirection
#30
IanSudbery
opened
5 years ago
0
bam_vs_bed error if bashrc outputs anything
#29
IanSudbery
opened
5 years ago
0
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